Cite this strain

"Massilioclostridium coli" (DSM 103344, Marseille-P2976, JCM 37075)

BacDive ID 160822

Type strain

Culture col. no. DSM 103344 Marseille-P2976 JCM 37075

NCBI tax ID(s) 1870991

Special Collections DSMZ Cadoret human gut

Links

"Massilioclostridium coli" DSM 103344 is a mesophilic prokaryote that was isolated from colon sample from patient.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407758

JCM 37075,DSM 103344

@ref 20215

Last LPSN update 2025-12-16 10:08:35

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus "Massilioclostridium"

Species "Massilioclostridium coli"

Full scientific name Massilioclostridium coli Lo et al. 2017

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67759	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
67759	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67759	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	96.7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67759	colon sample from patient	Marseille	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence LT598551 (>99% sequence identity) for Massilioclostridium coli subclade from Microbeatlas

Aquatic Samples	211
Soil Samples	32
Animal Samples	9490
Plant Samples	8
Total Samples	9741

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	PRJEB15310 assembly for Massilioclostridium coli Marseille-P2976	contig	GCA_900095865	2788500145	1870991	69.42

Genome browser: GCA_900095865

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67759	Ruminococcus sp. Marseille-P2976 partial 16S rRNA gene, strain Marseille-P2976	LT598551	1488		1870991

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Massilioclostridium coli Marseille-P2976T
NCBI: GCA_900095865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	79.90	no
125439	motility	BacteriaNetⓘ	no	64.60	no
125439	gram_stain	BacteriaNetⓘ	variable	65.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	96.70	no

Literature

Title	Authors	Journal	DOI	Year
Multi-omics study reveals gut microbiota dysbiosis and tryptophan metabolism alterations in GH-PitNET progression.	Liu J, Ye Z, Zhang Y, You S, Sun S, Lu L, Su W, Liu J, Pu J, Pan H, Zhu H, Deng K, Yao Y, Hu X, Zhang S.	Sci Rep	10.1038/s41598-025-07812-x	2025
Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups.	West KA, Yin X, Rutherford EM, Wee B, Choi J, Chrisman BS, Dunlap KL, Hannibal RL, Hartono W, Lin M, Raack E, Sabino K, Wu Y, Wall DP, David MM, Dabbagh K, DeSantis TZ, Iwai S.	Sci Rep	10.1038/s41598-022-21327-9	2022
Correlating the Gut Microbiota and Circulating Hormones with Acne Lesion Counts and Skin Biophysical Features.	Sivamani RK, Maloh J, Nong Y.	Microorganisms	10.3390/microorganisms11082049	2023
Exploring the Role of Gut Microbiota in Major Depressive Disorder and in Treatment Resistance to Antidepressants.	Fontana A, Manchia M, Panebianco C, Paribello P, Arzedi C, Cossu E, Garzilli M, Montis MA, Mura A, Pisanu C, Congiu D, Copetti M, Pinna F, Carpiniello B, Squassina A, Pazienza V.	Biomedicines	10.3390/biomedicines8090311	2020
Impact of Mediterranean Diet on Disease Activity and Gut Microbiota Composition of Rheumatoid Arthritis Patients.	Picchianti Diamanti A, Panebianco C, Salerno G, Di Rosa R, Salemi S, Sorgi ML, Meneguzzi G, Mariani MB, Rai A, Iacono D, Sesti G, Pazienza V, Lagana B.	Microorganisms	10.3390/microorganisms8121989	2020
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts.	Manghi P, Bhosle A, Wang K, Marconi R, Selma-Royo M, Ricci L, Asnicar F, Golzato D, Ma W, Hang D, Thompson KN, Franzosa EA, Nabinejad A, Tamburini S, Rimm EB, Garrett WS, Sun Q, Chan AT, Valles-Colomer M, Arumugam M, Bermingham KM, Giordano F, Davies R, Hadjigeorgiou G, Wolf J, Strowig T, Berry SE, Huttenhower C, Spector TD, Segata N, Song M.	Nat Microbiol	10.1038/s41564-024-01858-9	2024
Longitudinal fecal microbiome and metabolite data demonstrate rapid shifts and subsequent stabilization after an abrupt dietary change in healthy adult dogs.	Lin CY, Jha AR, Oba PM, Yotis SM, Shmalberg J, Honaker RW, Swanson KS.	Anim Microbiome	10.1186/s42523-022-00194-9	2022
Alteration of microbiota antibody-mediated immune selection contributes to dysbiosis in inflammatory bowel diseases.	Michaud E, Waeckel L, Gayet R, Goguyer-Deschaumes R, Chanut B, Jospin F, Bathany K, Monnoye M, Genet C, Prier A, Tokarski C, Gerard P, Roblin X, Rochereau N, Paul S.	EMBO Mol Med	10.15252/emmm.202115386	2022
Draft genomes and descriptions of Urmitella timonensis gen. nov., sp. nov. and Marasmitruncus massiliensis gen. nov., sp. nov., isolated from severely malnourished African children using culturomics.	Bellali S, Haddad G, Pham TP, Iwaza R, Ibrahim A, Armstrong N, Fadlane A, Couderc C, Diallo A, Sokhna C, Million M, Raoult D, Tidjani Alou M.	Antonie Van Leeuwenhoek	10.1007/s10482-022-01777-x	2022
Massilioclostridium coli gen. nov., sp. nov., a new member of the Clostridiaceae family isolated from the left colon of a 27-year-old woman.	Lo CI, Mailhe M, Ricaboni D, Vitton V, Benezech A, Michelle C, Armstrong N, Bittar F, Fournier PE, Raoult D, Lagier JC	New Microbes New Infect	10.1016/j.nmni.2017.01.004	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67759	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103344
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Massilioclostridium coli" (DSM 103344, Marseille-P2976, JCM 37075)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900095865

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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