Name: Proteus cibi FJ2001126-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160787

Type strain:

Species: Proteus cibi

Strain Designation: FJ2001126-3

Culture col. no.: DSM 106178, GDMCC 1.1244

Strain history: <- D. Wang, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; FJ2001126-3 <- J. Chen;

NCBI tax ID(s): 2050966 (species)

SI-ID 398863

DSM 106178

Section

Proteus cibi FJ2001126-3 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from food sample.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Proteus*
	Species	**Proteus cibi**
	Full Scientific Name (LPSN)	Proteus cibi Dai et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67828]	Gram stain	negative

[Ref.: #67828]	Cell length	1-3 µm

[Ref.: #67828]	Cell width	0.5-0.8 µm

[Ref.: #67828]	Cell shape	rod-shaped

[Ref.: #67828]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67724]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #67724]

Culture medium growth

[Ref.: #67724]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67724]

Culture medium composition

expand / minimize

[Ref.: #67724]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #67724]

Culture medium growth

[Ref.: #67724]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67724]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #67724]	growth	37 °C
[Ref.: #67828]	growth	10-45 °C
[Ref.: #67828]	optimum	37 °C

[Ref.: #67724]	Temperature range	mesophilic
[Ref.: #67828]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #67828]			optimum	7
[Ref.: #67828]			growth	4-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67828]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67828]		NaCl		growth	0-15	%(w/v)
[Ref.: #67828]		NaCl		optimum	1	%(w/v)

[Ref.: #67828]	Observation	cells have hairlike pili.
[Ref.: #67828]	Observation	swarming (under 1.5 % agar) is positiv

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67828]	amygdalin ChEBI	-	assimilation
[Ref.: #67828]	arbutin ChEBI	-	assimilation
[Ref.: #67828]	citrate ChEBI	-	assimilation
[Ref.: #67828]	D-arabinose ChEBI	+	builds acid from
[Ref.: #67828]	D-fructose ChEBI	+	builds acid from
[Ref.: #67828]	D-glucarate ChEBI	+	builds acid from
[Ref.: #67828]	esculin ChEBI	-	assimilation
[Ref.: #67828]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #67828]	L-tryptophan ChEBI	+	assimilation
[Ref.: #67828]	maltose ChEBI	+	assimilation
[Ref.: #67828]	melezitose ChEBI	+	builds acid from
[Ref.: #67828]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #67828]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #67828]	rhamnose ChEBI	-	assimilation
[Ref.: #67828]	salicin ChEBI	-	assimilation
[Ref.: #67828]	sucrose ChEBI	+	assimilation
[Ref.: #67828]	trehalose ChEBI	+	builds acid from
[Ref.: #67828]	turanose ChEBI	+	builds acid from
[Ref.: #67828]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67828]		hydrogen sulfide ChEBI	yes
[Ref.: #67828]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #67828]	esterase (C 4)	+
[Ref.: #67828]	esterase Lipase (C 8)	-
[Ref.: #67828]	lipase (C 14)	-
[Ref.: #67828]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #67828]	trypsin	-	3.4.21.4
[Ref.: #67828]	valine arylamidase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67724]	Sample type/isolated from	food sample
[Ref.: #67724]	Geographic location (country and/or sea, region)	Fujian province
[Ref.: #67724]	Country	China
[Ref.: #67724]	Country ISO 3 Code	CHN
[Ref.: #67724]	Continent	Asia
[Ref.: #67724]	Geographic location	26.0000°/118.0000°

[Ref.: #67828]	Sample type/isolated from	fod sample (Cold dish)
[Ref.: #67828]	Sampling date	2001
[Ref.: #67828]	Geographic location (country and/or sea, region)	Fujian province
[Ref.: #67828]	Country	China
[Ref.: #67828]	Country ISO 3 Code	CHN
[Ref.: #67828]	Continent	Asia
[Ref.: #67828]	Geographic location	26.0833°/119.2830°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MG913248 (>99% sequence identity) for Proteus from Microbeatlas

Aquatic Samples	10
Soil Samples	4
Animal Samples	74
Plant Samples	1
Total Samples	89

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67828]	Proteus sp. FJ2001126-3 16S ribosomal RNA gene, partial sequence	MG913248	1424	ENA	2050966 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67828]	Proteus cibi FJ2001126-3	GCA_003144405	contig	GenBank	2050966 tax ID
[Ref.: #66792]	Proteus cibi FJ2001126-3	2905384093	draft	JGI IMG/M	2050966 tax ID	*

[Ref.: #67828]

GC-content

38.1 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67724]

Culture collection no.

DSM 106178, GDMCC 1.1244

[Ref.: #113002]

SI-ID 398863

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proteus faecis sp. nov., and Proteus cibi sp. nov., two new species isolated from food and clinical samples in China.	Dai H, Chen A, Wang Y, Lu B, Wang Y, Chen J, Huang Y, Li Z, Fang Y, Xiao T, Cai H, Du Z, Wei Q, Kan B, Wang D	Int J Syst Evol Microbiol	10.1099/ijsem.0.003248	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67724

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106178

#67828

Hang Dai, Aiping Chen, Yubao Wang, Binghuai Lu, Yonglu Wang, Jianhui Chen, Ying Huang, Zhenpeng Li, Yujie Fang, Tao Xiao, Hongyan Cai, Zongjun Du, Qiang Wei, Biao Kan, Duochun Wang: Proteus faecis sp. nov., and Proteus cibi sp. nov., two new species isolated from food and clinical samples in China. IJSEM 69: 852 - 858 2019 ( DOI 10.1099/ijsem.0.003248 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113002

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398863.1 )

* These data were automatically processed and therefore are not curated

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