Name: Fundicoccus ignavus WS 4937
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160785

Type strain:

Species: Fundicoccus ignavus

Strain Designation: WS 4937

Culture col. no.: DSM 109652, LMG 31441

Strain history: <- M. Wenning, Techn. Univ. München; WS4937 <- F. Breitenwieser, Milchprüfring Baden-Württemberg

NCBI tax ID(s): 2664442 (species)

SI-ID 396960

DSM 109652

Other strains from Fundicoccus ignavus

F. ignavus WS 5303, DSM 109653, LMG 31442
F. ignavus Blut109, DSM 100966

Section

Fundicoccus ignavus WS 4937 is a mesophilic bacterium that was isolated from raw milk.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Aerococcaceae*
	Genus	*Fundicoccus*
	Species	**Fundicoccus ignavus**
	Full Scientific Name (LPSN)	Fundicoccus ignavus Siebert et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.291

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67722]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #67722]

Culture medium growth

[Ref.: #67722]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67722]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67722]			growth	30 °C

[Ref.: #67722]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.994

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67722]	Sample type/isolated from	raw milk
[Ref.: #67722]	Geographic location (country and/or sea, region)	Kirchheim, Teck
[Ref.: #67722]	Country	Germany
[Ref.: #67722]	Country ISO 3 Code	DEU
[Ref.: #67722]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MN640086 (>99% sequence identity) for Fundicoccus ignavus subclade from Microbeatlas

Aquatic Samples	344
Soil Samples	356
Animal Samples	1712
Plant Samples	110
Total Samples	2522

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67722]	Fundicoccus ignavus strain DSM 109652 16S ribosomal RNA gene, partial sequence	MN640086	1486	ENA	2664442 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fundicoccus ignavus DSM 109652	GCA_009659375	contig	GenBank	2664442 tax ID	*
[Ref.: #66792]	Aerococcaceae bacterium DSM 109652	2664440.3	wgs	PATRIC	2664442 tax ID	*
[Ref.: #66792]	Aerococcaceae bacterium WS4759	2664442.3	wgs	PATRIC	2664442 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aerococcaceae bacterium WS4759 PATRIC: 2664442.3
[Ref.: #69481]	spore-forming	yes	63	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aerococcaceae bacterium DSM 109652 PATRIC: 2664440.3
[Ref.: #69480]	motile	no	96.308	no
[Ref.: #69480]	gram-positive	yes	90.643	no
[Ref.: #69480]	anaerobic	no	94.885	no
[Ref.: #69480]	aerobic	no	90.705	no
[Ref.: #69480]	halophile	yes	89.076	no
[Ref.: #69480]	spore-forming	no	90.069	no
[Ref.: #69480]	glucose-util	yes	84.518	no
[Ref.: #69480]	flagellated	no	96.578	no
[Ref.: #69480]	thermophile	no	97.662	no
[Ref.: #69480]	glucose-ferment	yes	73.421	no

Availability in culture collections External links

[Ref.: #67722]

Culture collection no.

DSM 109652, LMG 31441

[Ref.: #113000]

SI-ID 396960

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fundicoccus ignavus gen. nov., sp. nov., a novel genus of the family Aerococcaceae isolated from bulk tank milk.	Siebert A, Huptas C, Wenning M, Scherer S, Doll EV	Int J Syst Evol Microbiol	10.1099/ijsem.0.004344	2020	*
Phylogeny	Fundicoccus fermenti sp. nov., an indigo-reducing facultative anaerobic alkaliphile isolated from indigo fermentation liquor used for dyeing.	Tu Z, Lopes HFS, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijsem.0.005239	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67722

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109652

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113000

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396960.1 )

* These data were automatically processed and therefore are not curated

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Aerococcaceae bacterium WS4759

Aerococcaceae bacterium DSM 109652

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