Name: Cellulosimicrobium composti SE3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160723

Type strain:

Species: Cellulosimicrobium composti

Strain Designation: SE3

Culture col. no.: DSM 112106, ATCC TSD-237

NCBI tax ID(s): 2672572 (species)

Special Collections

DSMZ

Other strains from Cellulosimicrobium composti

Section

When using BacDive for research please cite our paper

Cellulosimicrobium composti SE3 is a mesophilic bacterium that was isolated from coastal lagoon water.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Cellulosimicrobium*
	Species	**Cellulosimicrobium composti**
	Full Scientific Name (LPSN)	Cellulosimicrobium composti Hu et al. 2021

Synonym

Cellulosimicrobium fucosivorans

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %92.415
[Ref.: #125439]	Gram stain	positive Confidence in %99.8

[Ref.: #125438]	Motility	no Confidence in %95

Multimedia content

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Caption:

Medium 535 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

RICH MEDIUM (DSMZ Medium 736)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #67636]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67636]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %99.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67636]	Sample type/isolated from	coastal lagoon water
[Ref.: #67636]	Geographic location (country and/or sea, region)	San Elijo Lagoon in San Diego, California
[Ref.: #67636]	Country	USA
[Ref.: #67636]	Country ISO 3 Code	USA
[Ref.: #67636]	Continent	North America
[Ref.: #67636]	Geographic location	33.0041°/-117.2710°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cellulosimicrobium composti SE3	GCA_010287905	contig	GenBank ENA	2672572 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulosimicrobium fucosivorans SE3 NCBI: GCA_010287905.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	92.415	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.757	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	74.862	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	60.248	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	95	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cellulosimicrobium composti SE3 NCBI: GCA_010287905
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	70.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	79.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.1

Availability in culture collections External links

[Ref.: #67636]

Culture collection no.

DSM 112106, ATCC TSD-237

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67636

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112106

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Cellulosimicrobium fucosivorans SE3

Cellulosimicrobium composti SE3

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