Gimesia panareensis Enrichment 10, Enr10 | Type strain | DSM 100416, LMG 29082

Strain identifier

BacDive ID: 160662

Type strain:

Species: Gimesia panareensis

Strain Designation: Enrichment 10, Enr10

Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Enrichment 10 <- A. Stieler

SI-ID 405903

DSM 100416

Special Collections

Other strains from Gimesia panareensis

Section

External links

Gimesia panareensis Enrichment 10 is an aerobe, Gram-negative, other bacterium that was isolated from rust biofilm at a hot lake gas escape .

Gram-negative
other
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Planctomycetales*
	Family	*Planctomycetaceae*
	Genus	*Gimesia*
	Species	**Gimesia panareensis**
	Full Scientific Name (LPSN)	Gimesia panareensis Wiegand et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #68358]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %94.133

[Ref.: #68358]	Cell length	1.2-1.4 µm

[Ref.: #68358]	Cell width	0.7-0.9 µm

[Ref.: #68358]	Cell shape	other

[Ref.: #68358]

Colony color

cream-coloured

Multimedia content

[Ref.: #67572]

Caption:

Micrograph of Gimesia panareensis DSM100416. Scale bar represents 2µm.

[Ref.: #67572]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67572]

Culture medium

PLANCTOMYCES MEDIUM (DSMZ Medium 1560)

[Ref.: #67572]

Culture medium growth

[Ref.: #67572]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67572]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #67572]	growth	28 °C
[Ref.: #68358]	growth	15-37 °C
[Ref.: #68358]	optimum	32 °C

	pH	Kind of pH		pH
[Ref.: #68358]			optimum	7.5
[Ref.: #68358]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68358]

Oxygen tolerance

aerobe

[Ref.: #68358]	Observation	form rosettes which assemble into aggregates
[Ref.: #68358]	Observation	Cells have crateriform structures covering the entire cell surface and a stalk (usually about the length of the cell) opposite of the budding pole
[Ref.: #68358]	Observation	divide by budding, with the released buds having the same shape as the mother cells

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68358]

Fatty acid	Percentage
C16:1 w7c/C15 iso 2OH/C16:1 w6c	45.81
C16:0	31.54
C18:1 w7c	8.32
C18:1 w9c	4.38
C20:1 w7c	2.32
C17:1 w8c	2.13
C17:0	1.41
C18:0	1.01
C17:1 w6c	0.75
C15:0	0.5
C15:1 w6c	0.45
C12:0 3OH	0.43
C14:0 3OH/iso-C16:1 I	0.27
C18:1 w7c 11-methyl	0.23
C14:0	0.17
C16:0 10-methyl	0.17
C16:1 w5c	0.14

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67572]	Sample type/isolated from	rust biofilm at a hot lake gas escape (09_09_Cal_M_03)
[Ref.: #67572]	Geographic location (country and/or sea, region)	Tyrrhenian Sea (Mediterranean Sea) close to Panarea Island
[Ref.: #67572]	Country	Italy
[Ref.: #67572]	Country ISO 3 Code	ITA
[Ref.: #67572]	Continent	Europe

[Ref.: #68358]	Sample type/isolated from	rust biofilm at a hot lake gas escape
[Ref.: #68358]	Geographic location (country and/or sea, region)	Panarea Island
[Ref.: #68358]	Country	Italy
[Ref.: #68358]	Country ISO 3 Code	ITA
[Ref.: #68358]	Continent	Europe
[Ref.: #68358]	Enrichment culture	M1H NAG ASW medium
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67572]	Gimesia panareensis strain Enr10 16S ribosomal RNA gene, partial sequence	MK554508	1540	GenBank ENA	2527978 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68358]	Gimesia panareensis Enr10	GCA_007748155	chromosome	GenBank ENA	2527978 tax ID

[Ref.: #68358]

GC-content

53.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gimesia panareensis Enr10 NCBI: GCA_007748155.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.133	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.296	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.075	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	77.305	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.184	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	52.609	no

Availability in culture collections External links

[Ref.: #67572]

Culture collection no.

DSM 100416, LMG 29082

[Ref.: #112892]

SI-ID 405903

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere.	Wiegand S, Jogler M, Boedeker C, Heuer A, Rast P, Peeters SH, Jetten MSM, Kaster AK, Rohde M, Kallscheuer N, Jogler C	Antonie Van Leeuwenhoek	10.1007/s10482-020-01489-0	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67572

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100416

#68358

Sandra Wiegand, Mareike Jogler, Christian Boedeker, Anja Heuer, Patrick Rast, Stijn H. Peeters, Mike S. M. Jetten, Anne-Kristin Kaster, Manfred Rohde, Nicolai Kallscheuer & Christian Jogler: Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere. Antonie Van Leeuwenhoek 113: 1999 - 2018 2020 ( DOI 10.1007/s10482-020-01489-0 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112892

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405903.1 )

* These data were automatically processed and therefore are not curated

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Gimesia panareensis Enr10

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