Desulfolutivibrio sulfoxidireducens (DSM 107105, NBRC 113990, J.5.4.2-L.4.2.8)

Name: Desulfolutivibrio sulfoxidireducens (DSM 107105, NBRC 113990, J.5.4.2-L.4.2.8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160637

Type strain

Strain Designation J.5.4.2-L.4.2.8, J.5.4.2-L4.2.8

Culture col. no. DSM 107105 NBRC 113990 J.5.4.2-L.4.2.8 J.5.4.2-L4.2.8

NCBI tax ID(s) 2773299

Special Collections DSMZ Literature strains

History <- S. Spring, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; J.5.4.2-L.4.2.8 <- S. Spring; {2018}

Links

Desulfolutivibrio sulfoxidireducens J.5.4.2-L.4.2.8 is a Gram-negative, motile, vibrio-shaped bacterium that was isolated from pyrite-forming anaerobic enrichment culture inoculated with sewage sludge.

Gram-negative motile vibrio-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401083

NBRC 113990,DSM 107105

@ref 20215

Last LPSN update 2026-02-09 11:38:56

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Desulfolutivibrio

Species Desulfolutivibrio sulfoxidireducens

Full scientific name Desulfolutivibrio sulfoxidireducens Thiel et al. 2021

BacDive ID	Other strains from **Desulfolutivibrio sulfoxidireducens** (1)	Type strain
160636	D. sulfoxidireducens J.3.6.1-H.7, DSM 106783, NBRC 113989

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
69626	negative	2.5-6.5 µm	0.6 µm	vibrio-shaped		polar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67546	DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)		Medium recipe at MediaDive	Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641) Composition: Na-DL-lactate 2.49252 g/l Na2SO4 1.99402 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l Na2S2O3 x 5 H2O 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67546	positive	growth	30
69626	positive	growth	15-37
69626	positive	optimum	37
69626	negative	growth	42

Culture pH

@ref	Ability	Type	PH
69626	positive	optimum	6.5
69626	positive	growth	6.5-8.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	97.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69626	NaCl	positive	growth	1-20 %(w/v)
69626	NaCl	positive	optimum	1-7 %(w/v)

Observation

69626

Observationproduction of desulfoviridin type of dissimilatory sulfite reductase

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69626	30089 ChEBI	acetate	+	growth
69626		amorphous iron (iii) oxide	-	electron acceptor
69626	17968 ChEBI	butyrate	-	growth
69626	28262 ChEBI	dimethyl sulfoxide	+	electron acceptor
69626	33403 ChEBI	elemental sulfur	-	electron acceptor
69626	15740 ChEBI	formate	+	growth
69626	28757 ChEBI	fructose	-	growth
69626	17234 ChEBI	glucose	-	growth
69626	24996 ChEBI	lactate	+	growth
69626	24996 ChEBI	lactate	+/-	oxidation
69626	17632 ChEBI	nitrate	-	electron acceptor
69626	17272 ChEBI	propionate	-	growth
69626	16189 ChEBI	sulfate	+	electron acceptor
69626	16189 ChEBI	sulfate	+	growth
69626	16189 ChEBI	sulfate	+	reduction
69626	17359 ChEBI	sulfite	+	electron acceptor
69626	16094 ChEBI	thiosulfate	+	electron acceptor
69626	15724 ChEBI	trimethylamine n-oxide	-	electron acceptor

Enzymes

@ref	Value	Activity	Ec
69626	catalase	+	1.11.1.6
69626	cytochrome oxidase	-	1.9.3.1

Fatty acid profile

Metadata FA analysis

@ref

69626

Fatty acid	Percentage
anteiso-C15:0	56.5
iso-C16:0	8.1
anteiso-C17:1 w7c	5.5
C16:0	5.3
anteiso-C17:0	4
iso-C18:1 H	3.7
iso-C17:1 w7c	3.4
iso-C14:0	3
iso-C17:0	2.5
iso-C15:0	1.9
C16:1 w9c	1.2
iso-C16:1 H	1.2

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Isolation date
67546	pyrite-forming anaerobic enrichment culture inoculated with sewage sludge		Konstanz, sewage treatment plant	Germany	DEU	Europe	47.6777	9.1447 47.6777/9.1447
69626	Pyrite-forming anaerobic enrichment culture J5	1995-09-01	Constance	Germany	DEU	Europe	47.6772	9.14092 47.6772/9.14092	mineral base of DSM medium 641	with lactate (28 mM) or hydrogen (1 bar overpressure), sulfate (18 mM) and yeast extract (1 g/L)	2018-04-05

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1337647v1 assembly for Desulfolutivibrio sulfoxidireducens DSM 107105	complete	GCA_013376475	2661838.3	3000191421	2773299	98.23

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67546	Desulfolutivibrio sulfoxidireducens strain DSM 107105 16S ribosomal RNA gene, partial sequence	MN596862	1539		2773299

GC content

@ref	GC-content (mol%)	Method
67546	64.07	sequence analysis
69626	63.69	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulfolutivibrio sulfoxidireducens DSM 107105
NCBI: GCA_013376475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.40	no
125439	motility	BacteriaNetⓘ	no	54.40	no
125439	gram_stain	BacteriaNetⓘ	negative	83.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfolutivibrio sulfoxidireducens DSM 107105
NCBI: GCA_013376475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	86.04	no
125438	anaerobic	anaerobicⓘ	yes	86.26	no
125438	aerobic	aerobicⓘ	no	88.13	no
125438	spore-forming	spore-formingⓘ	no	81.66	no
125438	thermophilic	thermophileⓘ	no	78.24	no
125438	flagellated	motile2+ⓘ	yes	73.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Metabolic versatility of anaerobic sludge towards platform chemical production from waste glycerol.	Magalhaes CP, Alves JI, Duber A, Oleskowicz-Popiel P, Stams AJM, Cavaleiro AJ.	Appl Microbiol Biotechnol	10.1007/s00253-024-13248-6	2024
Phylogeny	Fundidesulfovibrio magnetotacticus sp. nov., a sulphate-reducing magnetotactic bacterium, isolated from sediments and freshwater of a pond.	Shimoshige H, Kobayashi H, Shimamura S, Miyazaki M, Maekawa T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005516	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67546	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107105
#69626	Joana Thiela, Stefan Spring, Brian J. Tindall, Cathrin Spröer, Boyke Bunk, Elif Koeksoy, David Kamanda Ngugi, Bernhard Schink, Michael Pester: Desulfolutivibrio sulfoxidireducens gen. nov., sp. nov., isolated from a pyrite-forming enrichment culture and reclassification of Desulfovibrio sulfodismutans as Desulfolutivibrio sulfodismutans comb. Nov. Syst Appl Microbiol. 43: 2020 ( DOI 10.1016/j.syapm.2020.126105 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Desulfolutivibrio sulfoxidireducens (DSM 107105, NBRC 113990, J.5.4.2-L.4.2.8)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_013376475

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media