Name: Bremerella volcania Pan 97
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160632

Type strain:

Species: Bremerella volcania

Strain Designation: Pan 97, Pan97

Culture col. no.: DSM 101992, LMG 29460

Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Pan 97 <- A. Stieler

NCBI tax ID(s): 2527984 (species)

SI-ID 403643

DSM 101992

Section

Bremerella volcania Pan 97 is a mesophilic, ovoid-shaped bacterium that was isolated from red biofilm at hyddrothermal vent system.

ovoid-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Pirellulaceae*
	Genus	*Bremerella*
	Species	**Bremerella volcania**
	Full Scientific Name (LPSN)	Bremerella volcania Rensink et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #68094]	Cell length	1.2-1.8 µm

[Ref.: #68094]	Cell width	0.6-1.0 µm

[Ref.: #68094]	Cell shape	ovoid-shaped

[Ref.: #68094]

Colony color

white to cream-coloured

Multimedia content

[Ref.: #67541]

Caption:

Micrograph of Bremerelle volvania DSM101992(T). Scare bar represents 2µm.

[Ref.: #67541]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67541]

Culture medium

PLANCTOMYCES MEDIUM (DSMZ Medium 1560)

[Ref.: #67541]

Culture medium growth

[Ref.: #67541]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67541]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #67541]	growth	28 °C
[Ref.: #68094]	growth	15-40 °C
[Ref.: #68094]	optimum	36 °C

[Ref.: #67541]	Temperature range	mesophilic
[Ref.: #68094]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68094]			optimum	7
[Ref.: #68094]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #68094]	Observation	divide by polar budding
[Ref.: #68094]	Observation	Cells are arranged in rosettes and usually form aggregates
[Ref.: #68094]	Observation	daughter cell having the same shape as the mother cell
[Ref.: #68094]	Observation	surface of the cell shows overall crateriform structures and fibre-like structures
[Ref.: #68094]	Observation	generation time of 9 h
[Ref.: #68094]	Observation	neutrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67541]	Sample type/isolated from	red biofilm at hyddrothermal vent system
[Ref.: #67541]	Geographic location (country and/or sea, region)	Thyrrhenian Sea near Panarea Island
[Ref.: #67541]	Country	Italy
[Ref.: #67541]	Country ISO 3 Code	ITA
[Ref.: #67541]	Continent	Europe

[Ref.: #68094]	Sample type/isolated from	red biofilm sampled in a hydrothermal vent
[Ref.: #68094]	Sampling date	2013-09-09
[Ref.: #68094]	Geographic location (country and/or sea, region)	near island Panarea
[Ref.: #68094]	Country	Italy
[Ref.: #68094]	Country ISO 3 Code	ITA
[Ref.: #68094]	Continent	Europe
[Ref.: #68094]	Geographic location	38.5568°/15.1097°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MK554518 (>99% sequence identity) for Pirellulaceae from Microbeatlas

Aquatic Samples	4526
Soil Samples	786
Animal Samples	513
Plant Samples	117
Total Samples	5942

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68094]	Bremerella volcania 16S ribosomal RNA gene, partial sequence	MK554518	1506	ENA	2527984 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68094]	Bremerella volcania Pan97	GCA_007748115	complete	GenBank	2527984 tax ID
[Ref.: #66792]	Bremerella volcania Pan97	2883475777	complete	JGI IMG/M	2527984 tax ID	*

[Ref.: #68094]

GC-content

56.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bremerella volcania Pan97 NCBI: GCA_007748115.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #67541]

Culture collection no.

DSM 101992, LMG 29460

[Ref.: #112870]

SI-ID 403643

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of the novel planctomycetal genus Bremerella, containing Bremerella volcania sp. nov., isolated from an active volcanic site, and reclassification of Blastopirellula cremea as Bremerella cremea comb. nov.	Rensink S, Wiegand S, Kallscheuer N, Rast P, Peeters SH, Heuer A, Boedeker C, Jetten MSM, Rohde M, Jogler M, Jogler C	Antonie Van Leeuwenhoek	10.1007/s10482-019-01378-1	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67541

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101992

#68094

Stephanie Rensink, Sandra Wiegand, Nicolai Kallscheuer, Patrick Rast, Stijn H. Peeters, Anja Heuer, Christian Boedeker, Mike S. M. Jetten, Manfred Rohde, Mareike Jogler, Christian Jogler: Description of the novel planctomycetal genus Bremerella, containing Bremerella volcania sp. nov., isolated from an active volcanic site, and reclassification of Blastopirellula cremea as Bremerella cremea comb. nov.. Antonie Van Leeuwenhoek 113: 1823 - 1837 2020 ( DOI 10.1007/s10482-019-01378-1 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112870

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403643.1 )

* These data were automatically processed and therefore are not curated

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Bremerella volcania Pan97

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