Virgibacillus sp. (DSM 24893, SK39)

Name: Virgibacillus sp. (DSM 24893, SK39)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160588

Type strain

Strain Designation SK39

Culture col. no. DSM 24893 SK39

NCBI tax ID(s) 1872700

Special Collections DSMZ

Links

SK39 is a mesophilic prokaryote that was isolated from Thai fish sauce fermentation process.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 397284

DSM 24893

@ref 20215

Last LPSN update 2025-12-16 10:08:32

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Virgibacillus

Full scientific name Virgibacillus Heyndrickx et al. 1998

Synonyms (2)

Paracerasibacillus
Salibacillus

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67496	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67496	positive	growth	30	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67496	Thai fish sauce fermentation process	East	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ910842 (>99% sequence identity) for Virgibacillus halodenitrificans subclade from Microbeatlas

Aquatic Samples	693
Soil Samples	2809
Animal Samples	1180
Plant Samples	368
Total Samples	5050

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67496	Virgibacillus sp. SK39 16S ribosomal RNA gene, partial sequence	DQ910842	1533		403959

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67496	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24893
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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