Name: Pseudodesulfovibrio mercurii ND132
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160437

Type strain:

Species: Pseudodesulfovibrio mercurii

Strain Designation: ND132

Culture col. no.: DSM 110689, ATCC TSD-224

Strain history: <- C. C. Gilmour, Smithsonian Environmental Research Center, Edgewater, Maryland, USA; ND132 <- C. C. Gilmour {1985}

NCBI tax ID(s): 641491 (species)

SI-ID 404548

DSM 110689

Section

Pseudodesulfovibrio mercurii ND132 is an anaerobe, mesophilic, motile bacterium that was isolated from brackish anaerobic bottom sediments.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Pseudodesulfovibrio*
	Species	**Pseudodesulfovibrio mercurii**
	Full Scientific Name (LPSN)	Pseudodesulfovibrio mercurii Gilmour et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.933

[Ref.: #69480]	Motility	yes Confidence in %97.266

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67345]

Culture medium

DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)

[Ref.: #67345]

Culture medium growth

[Ref.: #67345]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67345]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67345]			growth	30 °C

[Ref.: #67345]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.708

[Ref.: #69480]	Ability of spore formation	no Confidence in %98.893
[Ref.: #69481]	Ability of spore formation	no Confidence in %90

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67345]	Sample type/isolated from	brackish anaerobic bottom sediments
[Ref.: #67345]	Geographic location (country and/or sea, region)	Chesapeake Bay
[Ref.: #67345]	Country	USA
[Ref.: #67345]	Country ISO 3 Code	USA
[Ref.: #67345]	Continent	North America
[Ref.: #67345]	Geographic location	38.5644°/-76.4397°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HQ693571 (>99% sequence identity) for Pseudodesulfovibrio mercurii from Microbeatlas

Aquatic Samples	42
Soil Samples	3
Animal Samples	3
Plant Samples	1
Total Samples	49

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67345]	Desulfovibrio desulfuricans strain ND132 16S ribosomal RNA gene, partial sequence	HQ693571	1450	ENA	641491 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudodesulfovibrio mercurii ND132	GCA_000189295	complete	GenBank	641491 tax ID	*

[Ref.: #67345]

GC-content

65.2 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudodesulfovibrio mercurii ND132 NCBI: GCA_000189295.2
[Ref.: #69481]	spore-forming	no	90	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudodesulfovibrio mercurii ND132 NCBI: GCA_000189295.2
[Ref.: #69480]	motile	yes	90.049	no
[Ref.: #69480]	flagellated	yes	56.917	no
[Ref.: #69480]	gram-positive	no	99.016	no
[Ref.: #69480]	anaerobic	yes	97.56	no
[Ref.: #69480]	aerobic	no	97.801	no
[Ref.: #69480]	halophile	no	71.214	no
[Ref.: #69480]	spore-forming	no	96.183	no
[Ref.: #69480]	glucose-util	no	62.487	no
[Ref.: #69480]	thermophile	no	96.693	yes
[Ref.: #69480]	glucose-ferment	no	87.559	no

Availability in culture collections External links

[Ref.: #67345]

Culture collection no.

DSM 110689, ATCC TSD-224

[Ref.: #112684]

SI-ID 404548

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Contrary effects of phytoplankton Chlorella vulgaris and its exudates on mercury methylation by iron- and sulfate-reducing bacteria.	Yin X, Wang L, Liang X, Zhang L, Zhao J, Gu B	J Hazard Mater	10.1016/j.jhazmat.2022.128835	2022	*
Phylogeny	Pseudodesulfovibrio mercurii sp. nov., a mercury-methylating bacterium isolated from sediment.	Gilmour CC, Soren AB, Gionfriddo CM, Podar M, Wall JD, Brown SD, Michener JK, Urriza MSG, Elias DA	Int J Syst Evol Microbiol	10.1099/ijsem.0.004697	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67345

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110689

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112684

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404548.1 )

* These data were automatically processed and therefore are not curated

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