Name: Natronoglycomyces albus ACPA22
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160345

Type strain:

Species: Natronoglycomyces albus

Strain Designation: ACPA22

Culture col. no.: DSM 106290, VKM Ac-2771

Strain history: <- D. Y. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; ACPA22

NCBI tax ID(s): 2811108 (species)

SI-ID 406423

DSM 106290

Special Collections

Section

Natronoglycomyces albus ACPA22 is a Gram-positive bacterium that was isolated from soda solonchak topsoil.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Natronoglycomyces*
	Species	**Natronoglycomyces albus**
	Full Scientific Name (LPSN)	Natronoglycomyces albus Sorokin et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %93.782

[Ref.: #69480]	Motility	no Confidence in %94.875

[Ref.: #69314]	Colony color	Concrete grey (7023)
[Ref.: #69314]	Cultivation medium used	ISP 4

[Ref.: #69314]	Colony color	Beige (1001)
[Ref.: #69314]	Cultivation medium used	suter with tyrosine

[Ref.: #69314]	Colony color	Beige (1001)
[Ref.: #69314]	Cultivation medium used	suter without tyrosine

[Ref.: #69314]	Colony color	Ivory (1014)
[Ref.: #69314]	Cultivation medium used	ISP 2

[Ref.: #69314]	Colony color	Light ivory (1015)
[Ref.: #69314]	Cultivation medium used	ISP 3

[Ref.: #69314]	Colony color	Light ivory (1015)
[Ref.: #69314]	Cultivation medium used	ISP 5

[Ref.: #69314]	Colony color	Light ivory (1015)
[Ref.: #69314]	Cultivation medium used	ISP 7

[Ref.: #69314]	Colony color	Sand yellow (1002)
[Ref.: #69314]	Cultivation medium used	ISP 6

[Ref.: #69314]	Pigment production	no
[Ref.: #69314]	Pigment name	Melanin
[Ref.: #69314]	Pigment production	no
[Ref.: #69314]	Pigment name	soluble pigment

[Ref.: #69314]	Multicellular complex forming ability	no
[Ref.: #69314]	Multicellular complex name	Aerial mycelium
[Ref.: #69314]	Medium Name (multicellularity)	ISP 2

[Ref.: #69314]	Multicellular complex forming ability	no
[Ref.: #69314]	Multicellular complex name	Aerial mycelium
[Ref.: #69314]	Medium Name (multicellularity)	ISP 3

[Ref.: #69314]	Multicellular complex forming ability	no
[Ref.: #69314]	Multicellular complex name	Aerial mycelium
[Ref.: #69314]	Medium Name (multicellularity)	ISP 4

[Ref.: #69314]	Multicellular complex forming ability	no
[Ref.: #69314]	Multicellular complex name	Aerial mycelium
[Ref.: #69314]	Medium Name (multicellularity)	ISP 5

[Ref.: #69314]	Multicellular complex forming ability	no
[Ref.: #69314]	Multicellular complex name	Aerial mycelium
[Ref.: #69314]	Medium Name (multicellularity)	ISP 6

[Ref.: #69314]	Multicellular complex forming ability	no
[Ref.: #69314]	Multicellular complex name	Aerial mycelium
[Ref.: #69314]	Medium Name (multicellularity)	ISP 7

[Ref.: #69314]	Multicellular complex forming ability	no
[Ref.: #69314]	Multicellular complex name	Aerial mycelium
[Ref.: #69314]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69314]	Multicellular complex forming ability	no
[Ref.: #69314]	Multicellular complex name	Aerial mycelium
[Ref.: #69314]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #67251]

Caption:

Medium 514 pH10 30°C

[Ref.: #67251]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67251]

Culture medium

HORIKOSHI-1 MEDIUM (DSMZ Medium 1081)

[Ref.: #67251]

Culture medium growth

[Ref.: #67251]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #67251]

Culture medium

YIM MEDIUM + 10 % NACL (DSMZ Medium 1302)

[Ref.: #67251]

Culture medium growth

[Ref.: #67251]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #67251]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #67251]

Culture medium growth

[Ref.: #67251]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67251]

Culture medium composition

expand / minimize

[Ref.: #67251]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #67251]

Culture medium growth

[Ref.: #67251]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67251]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67251]			growth	28 °C
[Ref.: #67251]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69314]		NaCl		growth	0-7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69314]	arabinose ChEBI	-	growth
[Ref.: #69314]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69314]	fructose ChEBI	-	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69314]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69314]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69314]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69314]	raffinose ChEBI	-	growth
[Ref.: #69314]	rhamnose ChEBI	-	growth
[Ref.: #69314]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69314]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69314]	3807	-	+	+	-	-	-	-	-	-	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69314]	5991	not determinedn.d.	-	+	+	+/-	+	+	-	+/-	+/-	-	+/-	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67251]	Sample type/isolated from	soda solonchak topsoil
[Ref.: #67251]	Geographic location (country and/or sea, region)	Choibalsan Province
[Ref.: #67251]	Country	Mongolia
[Ref.: #67251]	Country ISO 3 Code	MNG
[Ref.: #67251]	Continent	Asia
[Ref.: #67251]	Geographic location	53.1050°/80.3400°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67251]	Natronoglycomyces albus strain ACPA22 16S ribosomal RNA gene, partial sequence	KY775645	1465	GenBank ENA	2811108 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Natronoglycomyces albus DSM 106290	GCA_016925535	complete	GenBank ENA	2811108 tax ID	*
[Ref.: #66792]	Glycomycetaceae bacterium DSM 106290	2811108.3	complete	PATRIC	2811108 tax ID	*

[Ref.: #67251]

GC-content

61.5 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Natronoglycomyces albus DSM 106290 NCBI: GCA_016925535.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	84	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Natronoglycomyces albus DSM 106290 NCBI: GCA_016925535.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	93.782	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.207	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.819	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	65.142	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.776	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94.875	no

Availability in culture collections External links

[Ref.: #67251]

Culture collection no.

DSM 106290, VKM Ac-2771

[Ref.: #112597]

SI-ID 406423

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil.	Sorokin DY, Khijniak TV, Zakharycheva AP, Elcheninov AG, Hahnke RL, Boueva OV, Ariskina EV, Bunk B, Kublanov IV, Evtushenko LI	Int J Syst Evol Microbiol	10.1099/ijsem.0.004804	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67251

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106290

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69314

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112597

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406423.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Natronoglycomyces albus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Natronoglycomyces albus DSM 106290

Natronoglycomyces albus DSM 106290

Change proposal

Change proposal