Name: Atribacter laminatus RT761
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160321

Type strain:

Species: Atribacter laminatus

Strain Designation: RT761

Culture col. no.: DSM 105538, NBRC 112890

Strain history: <- T. Katayama, Natl. Inst. Advanced Industrial Sci. and Technol., Tsukuba, Japan; RT761 <- T. Katayama {2016}

NCBI tax ID(s): 2847778 (species)

SI-ID 406965

DSM 105538

Special Collections

DSMZ

Section

Atribacter laminatus RT761 is an anaerobe bacterium that was isolated from sludge sediment and formation water derived from natural gas-bearing aquifers.

anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Atribacterota*
	Class	*Atribacteria*
	Order	*Atribacterales*
	Family	*Atribacteraceae*
	Genus	*Atribacter*
	Species	**Atribacter laminatus**
	Full Scientific Name (LPSN)	Atribacter laminatus Katayama et al. 2021

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67224]

Culture medium

PROPIONIGENIUM MODESTUM MEDIUM (MARINE) (DSMZ Medium 293)

[Ref.: #67224]

Culture medium growth

[Ref.: #67224]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67224]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67224]			growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %92.551

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67224]	Sample type/isolated from	sludge sediment and formation water derived from natural gas-bearing aquifers
[Ref.: #67224]	Geographic location (country and/or sea, region)	Chosei, Chiba Prefecture
[Ref.: #67224]	Country	Japan
[Ref.: #67224]	Country ISO 3 Code	JPN
[Ref.: #67224]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Atribacter laminatus RT761	GCA_015775515	complete	GenBank ENA	2847778 tax ID	*

[Ref.: #67224]

GC-content

38.7 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Atribacter laminatus RT761 NCBI: GCA_015775515.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	63	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Atribacter laminatus RT761 NCBI: GCA_015775515.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	74.813	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	92.551	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.638	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	79.43	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	64.023	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.604	no

Availability in culture collections External links

[Ref.: #67224]

Culture collection no.

DSM 105538, NBRC 112890

[Ref.: #112576]

SI-ID 406965

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation of a member of the candidate phylum 'Atribacteria' reveals a unique cell membrane structure.	Katayama T, Nobu MK, Kusada H, Meng XY, Hosogi N, Uematsu K, Yoshioka H, Kamagata Y, Tamaki H	Nat Commun	10.1038/s41467-020-20149-5	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67224

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105538

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112576

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406965.1 )

* These data were automatically processed and therefore are not curated

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