Solibaculum mannosilyticum (JCM 34081, DSM 111571, 12CBH8)

Name: Solibaculum mannosilyticum (JCM 34081, DSM 111571, 12CBH8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160202

Type strain

Strain Designation 12CBH8

Culture col. no. JCM 34081 DSM 111571 12CBH8

NCBI tax ID(s) 2780922

Special Collections DSMZ JCM

History DSMZ <- M. Sakamoto, RIKEN BRC-JCM, Japan; 12CBH8 JCM <-- M. Sakamoto; RIKEN BRC-JCM, Japan; 12CBH8.

Links

Solibaculum mannosilyticum 12CBH8 is a bacterium that was isolated from feces of man.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401012

JCM 34081,DSM 111571

@ref 20215

Last LPSN update 2026-05-29 08:44:23

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Solibaculum

Species Solibaculum mannosilyticum

Full scientific name Solibaculum mannosilyticum Sakamoto et al. 2021

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67106	YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)		Medium recipe at MediaDive	Name: YCFA MEDIUM (modified) (DSMZ Medium 1611) Composition: Casitone 10.0 g/l Glucose 5.0 g/l NaHCO3 4.0 g/l Yeast extract 2.5 g/l Acetic acid 1.78695 g/l L-Cysteine HCl 1.0 g/l NaCl 0.9 g/l Propionic acid 0.62559 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l CaCl2 x 2 H2O 0.09 g/l n-Valeric acid 0.08451 g/l iso-Valeric acid 0.0837899 g/l iso-Butyric acid 0.07695 g/l MgSO4 x 7 H2O 0.045 g/l Hemin 0.01 g/l Resazurin 0.001 g/l Pyridoxine hydrochloride 0.0001 g/l Nicotinic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l D-Calcium pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Lipoic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67106	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	95.85
125439	facultative anaerobe	92.233

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67106	feces of man	Tsukuba	Japan	JPN	Asia
67770	Feces of a 35-years-old healthy Japanese man

Taxonmaps

69479

Global distribution of 16S sequence LC589980 (>99% sequence identity) for Oscillospiraceae from Microbeatlas

Aquatic Samples	491
Soil Samples	192
Animal Samples	30072
Plant Samples	37
Total Samples	30792

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1514023v1 assembly for Solibaculum mannosilyticum 12CBH8	complete	GCA_015140235	2751154.3	2964042299	2780922	98.23

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Solibaculum mannosilyticum 12CBH8 gene for 16S rRNA, partial sequence	LC589980	1453		2780922

GC content

@ref	GC-content (mol%)	Method
67770	50.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1514023v1 assembly for Solibaculum mannosilyticum 12CBH8
NCBI: GCA_015140235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.23	no
125439	gram_stain	BacteriaNetⓘ	negative	38.21	no
125439	motility	BacteriaNetⓘ	yes	41.17	no
125439	spore_formation	BacteriaNetⓘ	no	68.02	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Solibaculum mannosilyticum 12CBH8
NCBI: GCA_015140235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	73.81	no
125438	anaerobic	anaerobicⓘ	yes	95.85	no
125438	aerobic	aerobicⓘ	no	97.95	no
125438	spore-forming	spore-formingⓘ	no	51.22	no
125438	thermophilic	thermophileⓘ	no	83.47	yes
125438	flagellated	motile2+ⓘ	no	88.48	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Coprobacter secundus subsp. similis subsp. nov. and Solibaculum mannosilyticum gen. nov., sp. nov., isolated from human feces.	Sakamoto M, Ikeyama N, Toyoda A, Murakami T, Mori H, Morohoshi S, Kunihiro T, Iino T, Ohkuma M	Microbiol Immunol	10.1111/1348-0421.12886	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67106	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111571
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Solibaculum mannosilyticum (JCM 34081, DSM 111571, 12CBH8)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_015140235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media