Name: Anaerococcus mediterraneensis DSM 103343
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160024

Type strain:

Species: Anaerococcus mediterraneensis

Culture col. no.: DSM 103343, Marseille-P2765

Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2765 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière

NCBI tax ID(s): 1870984 (species)

Section

Anaerococcus mediterraneensis DSM 103343 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from vaginal sample from patient.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Anaerococcus*
	Species	"Anaerococcus mediterraneensis"
	Full Scientific Name (LPSN)	Anaerococcus mediterraneensis Diop et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66928]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #66928]

Culture medium growth

[Ref.: #66928]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66928]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66928]			growth	37 °C

[Ref.: #66928]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.999

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66928]	Sample type/isolated from	vaginal sample from patient
[Ref.: #66928]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #66928]	Country	France
[Ref.: #66928]	Country ISO 3 Code	FRA
[Ref.: #66928]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LT598544 (>99% sequence identity) for Anaerococcus mediterraneensis subclade from Microbeatlas

Aquatic Samples	77
Soil Samples	90
Animal Samples	7619
Plant Samples	47
Total Samples	7833

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66928]	Anaerococcus mediterraneensis partial 16S rRNA gene, type strain Marseille-P2765T	LT598544	1491	ENA	1870984 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerococcus mediterraneensis Marseille-P2765T	GCA_900128415	complete	GenBank	1870984 tax ID	*
[Ref.: #66792]	Anaerococcus mediterraneensis Marseille-P2765	2751185761	complete	JGI IMG/M	1870984 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerococcus mediterraneensis Marseille-P2765 NCBI: GCA_900128415.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerococcus mediterraneensis Marseille-P2765 NCBI: GCA_900128415.1
[Ref.: #69480]	motile	no	93.364	no
[Ref.: #69480]	flagellated	no	96.95	no
[Ref.: #69480]	gram-positive	yes	93.705	no
[Ref.: #69480]	anaerobic	yes	99.371	no
[Ref.: #69480]	aerobic	no	98.04	no
[Ref.: #69480]	halophile	yes	53.651	no
[Ref.: #69480]	spore-forming	no	89.112	no
[Ref.: #69480]	glucose-ferment	yes	68.764	no
[Ref.: #69480]	thermophile	no	98.956	yes
[Ref.: #69480]	glucose-util	yes	83.604	no

Availability in culture collections External links

[Ref.: #66928]

Culture collection no.

DSM 103343, Marseille-P2765

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66928

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103343

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Anaerococcus mediterraneensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Anaerococcus mediterraneensis Marseille-P2765

Anaerococcus mediterraneensis Marseille-P2765

Change proposal

Change proposal