Name: Lujinxingia sediminis SEH01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159925

Type strain:

Species: Lujinxingia sediminis

Strain Designation: SEH01

Culture col. no.: DSM 101859, KCTC 42950

Strain history: <- Z.-J. Du, Shandong University at Weihai, China; SEH01 <- Z.-J. Du, Shandong University at Weihai, China; SEH01

NCBI tax ID(s): 2480984 (species)

SI-ID 396777

DSM 101859

Section

Lujinxingia sediminis SEH01 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from marine sediment.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Bradymonadales*
	Family	*Bradymonadaceae*
	Genus	*Lujinxingia*
	Species	**Lujinxingia sediminis**
	Full Scientific Name (LPSN)	Lujinxingia sediminis Guo et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68174]	Gram stain	negative

[Ref.: #68174]	Cell length	1.8-3.2 µm

[Ref.: #68174]	Cell width	0.4-0.5 µm

[Ref.: #68174]	Cell shape	rod-shaped

[Ref.: #68174]	Motility	yes

[Ref.: #68174]	Flagellum arrangement	gliding

[Ref.: #68174]	Colony size	1-3 mm
[Ref.: #68174]	Colony color	red centre
[Ref.: #68174]	Colony shape	circular
[Ref.: #68174]	Incubation period	5 days
[Ref.: #68174]	Cultivation medium used	modified MA

[Ref.: #68174]	Pigment production	yes
[Ref.: #68174]	Pigment name	Carotenoid pigment
[Ref.: #68174]	Pigment production	yes
[Ref.: #68174]	Pigment name	lycopene
[Ref.: #68174]	Pigment production	yes
[Ref.: #68174]	Pigment name	rhodopsin
[Ref.: #68174]	Pigment production	yes
[Ref.: #68174]	Pigment name	dimethyl-spheroidene

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66829]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #66829]

Culture medium growth

[Ref.: #66829]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66829]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #66829]	growth	30 °C
[Ref.: #68174]	growth	20-42 °C
[Ref.: #68174]	optimum	37 °C

[Ref.: #66829]	Temperature range	mesophilic
[Ref.: #68174]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68174]			optimum	8
[Ref.: #68174]			growth	7.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68174]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68174]		NaCl		growth	0-9	%(w/v)
[Ref.: #68174]		NaCl		optimum	2-4	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68174]	alginate ChEBI	-	hydrolysis
[Ref.: #68174]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #68174]	casein	-	hydrolysis
[Ref.: #68174]	D-glucose ChEBI	+	builds acid from
[Ref.: #68174]	D-glucose 6-phosphate ChEBI	-	oxidation
[Ref.: #68174]	D-ribose ChEBI	+	builds acid from
[Ref.: #68174]	D-tagatose ChEBI	+	builds acid from
[Ref.: #68174]	dextrin ChEBI	-	oxidation
[Ref.: #68174]	gelatin ChEBI	+	hydrolysis
[Ref.: #68174]	glycyl-L-proline ChEBI	-	oxidation
[Ref.: #68174]	L-alanine ChEBI	+	oxidation
[Ref.: #68174]	L-histidine ChEBI	-	oxidation
[Ref.: #68174]	L-malate ChEBI	-	oxidation
[Ref.: #68174]	L-sorbose ChEBI	+	builds acid from
[Ref.: #68174]	nitrate ChEBI	-	reduction
[Ref.: #68174]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #68174]	propionate ChEBI	+	oxidation
[Ref.: #68174]	starch ChEBI	-	hydrolysis
[Ref.: #68174]	turanose ChEBI	+	builds acid from
[Ref.: #68174]	turanose ChEBI	+	oxidation
[Ref.: #68174]	tween 20 ChEBI	+	hydrolysis
[Ref.: #68174]	tween 40 ChEBI	+	hydrolysis
[Ref.: #68174]	tween 60 ChEBI	+	hydrolysis
[Ref.: #68174]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #68174]	acetylspiramycin ChEBI	yes	30	µg
[Ref.: #68174]	ampicillin ChEBI	yes	10	µg
[Ref.: #68174]	carbenicillin ChEBI	yes	100	µg
[Ref.: #68174]	cefotaxime sodium ChEBI	yes	30	µg
[Ref.: #68174]	ceftriaxone ChEBI	yes	30	µg
[Ref.: #68174]	chloramphenicol ChEBI	yes	30	µg
[Ref.: #68174]	clarithromycin ChEBI	yes	15	µg
[Ref.: #68174]	clindamycin ChEBI	yes	30	µg
[Ref.: #68174]	kanamycin ChEBI				yes	30	µg
[Ref.: #68174]	lincomycin ChEBI				yes	2	µg
[Ref.: #68174]	nalidixic acid ChEBI	yes	30	µg
[Ref.: #68174]	neomycin ChEBI				yes	30	µg
[Ref.: #68174]	norfloxacin ChEBI				yes	10	µg
[Ref.: #68174]	ofloxacin ChEBI				yes	5	µg
[Ref.: #68174]	rifampicin ChEBI	yes	5	µg
[Ref.: #68174]	streptomycin ChEBI				yes	10	µg
[Ref.: #68174]	sulfamethoxydiazine ChEBI	yes	10	µg
[Ref.: #68174]	tetracycline ChEBI	yes	30	µg
[Ref.: #68174]	tobramycin ChEBI				yes	10	µg
[Ref.: #68174]	vancomycin ChEBI				yes	30	µg
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68174]	acetoin ChEBI	no
[Ref.: #68174]	hydrogen sulfide ChEBI	no
[Ref.: #68174]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68174]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68174]	acid phosphatase	-	3.1.3.2
[Ref.: #68174]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68174]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68174]	catalase	+	1.11.1.6
[Ref.: #68174]	cystine arylamidase	-	3.4.11.3
[Ref.: #68174]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68174]	esterase (C 4)	+
[Ref.: #68174]	esterase Lipase (C 8)	+
[Ref.: #68174]	leucine arylamidase	+	3.4.11.1
[Ref.: #68174]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68174]	trypsin	-	3.4.21.4
[Ref.: #68174]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68174]

Fatty acid	Percentage	ECL
C15:0 iso	70.5
C14:0 iso 3OH	11.4
C17:0 iso	6.5
Unknown C13	2.9	13.565
C17:1 iso w10c	2.6
C16:1 w9c	1.8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66829]	Sample type/isolated from	marine sediment
[Ref.: #66829]	Geographic location (country and/or sea, region)	Weihai, Xiaoshi Island (37° 28' 15.81'' N, 121° 57' 49.25'' E)
[Ref.: #66829]	Country	China
[Ref.: #66829]	Country ISO 3 Code	CHN
[Ref.: #66829]	Continent	Asia
[Ref.: #66829]	Geographic location	37.4711°/121.9640°

[Ref.: #68174]	Sample type/isolated from	coastal sediment
[Ref.: #68174]	Geographic location (country and/or sea, region)	Xiaoshi Island, Weihai
[Ref.: #68174]	Country	China
[Ref.: #68174]	Country ISO 3 Code	CHN
[Ref.: #68174]	Continent	Asia
[Ref.: #68174]	Geographic location	37.5267°/122.0160°
[Ref.: #68174]	Enrichment culture	marine agar 2216
[Ref.: #68174]	Enrichment culture duration	7 days
[Ref.: #68174]	Enrichment culture temperature	25 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68174]	Lujinxingia sediminis strain SEH01 16S ribosomal RNA gene, partial sequence	MG652491	1524	ENA	2480984 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68174]	Lujinxingia sediminis SEH01	GCA_004005565	contig	GenBank	2480984 tax ID
[Ref.: #66792]	Lujinxingia sediminis SEH01	2887455215	draft	JGI IMG/M	2480984 tax ID	*

[Ref.: #66829]	GC-content	63.6 mol%	sequence analysis
[Ref.: #68174]	GC-content	63.6 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #66829]

Culture collection no.

DSM 101859, KCTC 42950

[Ref.: #112207]

SI-ID 396777

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Lujinxingia vulgaris sp. nov., isolated from coastal sediment via prey-traps.	Wang S, Mu DS, Li GY, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-021-01640-5	2021	*
Phylogeny	Microvenator marinus gen. nov., sp. nov., isolated from marine sediment, and description of Microvenatoraceae fam. nov. and Lujinxingiaceae fam. nov.	Wang S, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005380	2022	*
Phylogeny	Lujinxingia litoralis gen. nov., sp. nov. and Lujinxingia sediminis sp. nov., two new representatives in the order Bradymonadales.	Guo LY, Li CM, Wang S, Mu DS, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003556	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66829

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101859

#68174

Ling-Yun Guo, Chang-Ming Li, Shuo Wang, Da-Shuai Mu and Zong-Jun Du: Lujinxingia litoralis gen. nov., sp. nov. and Lujinxingia sediminis sp. nov., two new representatives in the order Bradymonadales. IJSEM 69: 2767 - 2774 2019 ( DOI 10.1099/ijsem.0.003556 )

#112207

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396777.1 )

* These data were automatically processed and therefore are not curated

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