Bifidobacterium simiarum (DSM 103153, JCM 31793, TRI 7)

Name: Bifidobacterium simiarum (DSM 103153, JCM 31793, TRI 7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159319

Type strain

Culture col. no. DSM 103153 JCM 31793 TRI 7

NCBI tax ID(s) 2045441

Special Collections DSMZ JCM

History <- P. Mattarelli, Univ. Bologna, Italy; TRI 7 <- M. Modesto and S. Michelini P. Mattarelli; Dept. of Agric. Sci., Bologna Univ., Italy; TRI 7.

Links

Bifidobacterium simiarum DSM 103153 is a bacterium that was isolated from faeces of Saguinus imperator.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 403787

LMG 33150,JCM 31793,DSM 103153

@ref 20215

Last LPSN update 2026-02-09 11:38:35

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium simiarum

Full scientific name Bifidobacterium simiarum Modesto et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	97.9
125438		92

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66142	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)		Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66142	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
66142	faeces of Saguinus imperator		Bussolengo (Verona)	Italy	ITA	Europe
67770	Feces of an adult subject of the emperor tamarin (Saguinus imperator) housed under semi-naturalconditions in Parco Natura Viva - Garda Zoological Park	Saguinus imperator	Bussolengo, Verona	Italy	ITA	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM280290v1 assembly for Bifidobacterium simiarum TRI 7	contig	GCA_002802905	2045441.3	2791355239	2045441	70.74

GC content

@ref	GC-content (mol%)	Method
67770	63.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium simiarum TRI 7
NCBI: GCA_002802905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	58.60	no
125439	motility	BacteriaNetⓘ	no	88.80	no
125439	gram_stain	BacteriaNetⓘ	positive	97.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium simiarum TRI 7
NCBI: GCA_002802905.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.25	no
125438	anaerobic	anaerobicⓘ	yes	79.84	no
125438	aerobic	aerobicⓘ	no	90.04	no
125438	spore-forming	spore-formingⓘ	no	87.68	no
125438	thermophilic	thermophileⓘ	no	92.50	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genetic insights into the dark matter of the mammalian gut microbiota through targeted genome reconstruction.	Lugli GA, Alessandri G, Milani C, Viappiani A, Fontana F, Tarracchini C, Mancabelli L, Argentini C, Ruiz L, Margolles A, van Sinderen D, Turroni F, Ventura M.	Environ Microbiol	10.1111/1462-2920.15559	2021
Phylogeny	Bifidobacterium primatium sp. nov., Bifidobacterium scaligerum sp. nov., Bifidobacterium felsineum sp. nov. and Bifidobacterium simiarum sp. nov.: Four novel taxa isolated from the faeces of the cotton top tamarin (Saguinus oedipus) and the emperor tamarin (Saguinus imperator).	Modesto M, Puglisi E, Bonetti A, Michelini S, Spiezio C, Sandri C, Sgorbati B, Morelli L, Mattarelli P	Syst Appl Microbiol	10.1016/j.syapm.2018.07.005	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66142	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103153
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Bifidobacterium simiarum (DSM 103153, JCM 31793, TRI 7)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002802905

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media