Streptomyces bacillaris DSM 40598 is a bacterium that was isolated from Soil.
genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces bacillaris |
| Full scientific name Streptomyces bacillaris (Krassilnikov 1958) Pridham 1970 (Approved Lists 1980) |
| Synonyms (2) |
| BacDive ID | Other strains from Streptomyces bacillaris (3) | Type strain |
|---|---|---|
| 15043 | S. bacillaris WC3068, DSM 40066, ATCC 19762, CBS 500.68, ... | |
| 15045 | S. bacillaris MP-1, DSM 40915 | |
| 165069 | S. bacillaris JCM 4992, INMI 448, VKM Ac-59 |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125439 | positive | 97.82 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9674 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 18661 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18661 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 18661 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 18661 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 18661 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 18661 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 9674 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | Medium recipe at MediaDive | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | facultative anaerobe | 96.23 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 18661 | 22599 ChEBI | arabinose | - | ||
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 18661 | 62968 ChEBI | cellulose | + | ||
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 18661 | 28757 ChEBI | fructose | + | ||
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 18661 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 18661 | 29864 ChEBI | mannitol | + | ||
| 18661 | 17268 ChEBI | myo-inositol | - | ||
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 18661 | 16634 ChEBI | raffinose | - | ||
| 18661 | 26546 ChEBI | rhamnose | - | ||
| 18661 | 17992 ChEBI | sucrose | + | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 18661 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68368 | gelatinase | + | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Sample type | Country | |
|---|---|---|---|
| 67770 | Soil | Central Asia |
Global distribution of 16S sequence AB184439 (>99% sequence identity) for Streptomyces from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM326867v1 assembly for Streptomyces bacillaris ATCC 15855 | complete | 68179 | 98.68 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces bacillaris strain DSM 40598 16S ribosomal RNA gene, partial sequence | GU383169 | 781 | 68179 | ||
| 9674 | Streptomyces bacillaris gene for 16S rRNA, partial sequence, strain: NBRC 13487 | AB184439 | 1468 | 68179 | ||
| 67770 | Streptomyces bacillaris strain KCTC 9018 16S ribosomal RNA gene, partial sequence | AY999817 | 1419 | 68179 | ||
| 124043 | Streptomyces bacillaris gene for 16S ribosomal RNA, partial sequence, strain: JCM 4727. | D44314 | 120 | 68179 | ||
| 124043 | Streptomyces bacillaris strain NBRC 13487(T) 16S ribosomal RNA gene, partial sequence. | MN688248 | 532 | 68179 | ||
| 124043 | Streptomyces bacillaris strain NBRC 13487(T) 16S ribosomal RNA gene, partial sequence. | MN688680 | 489 | 68179 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 96.23 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 97.82 | no |
| 125439 | motility | BacteriaNetⓘ | no | 89.09 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 76.79 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.13 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.93 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 89.32 | no |
| 125438 | aerobic | aerobicⓘ | yes | 87.85 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.50 | no |
| 125438 | flagellated | motile2+ⓘ | no | 89.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Dataset of the complete genome of Streptomyces cavourensis strain 2BA6PGT isolated from sediment from the bottom of the salt lake Verkhnee Beloe (Buryatia, Russia). | Chong ETJ, Chiang C, Png KK, Abidueva E, Zaitseva S, Sun C, Lee PC. | Data Brief | 10.1016/j.dib.2022.108877 | 2023 | |
| Genetics | Revealing Genome-Based Biosynthetic Potential of Streptomyces sp. BR123 Isolated from Sunflower Rhizosphere with Broad Spectrum Antimicrobial Activity. | Ashraf N, Zafar S, Makitrynskyy R, Bechthold A, Spiteller D, Song L, Anwar MA, Luzhetskyy A, Khan AN, Akhtar K, Khaliq S. | Antibiotics (Basel) | 10.3390/antibiotics11081057 | 2022 | |
| Genetics | Pan-Genome of the Genus Streptomyces and Prioritization of Biosynthetic Gene Clusters With Potential to Produce Antibiotic Compounds. | Caicedo-Montoya C, Manzo-Ruiz M, Rios-Estepa R. | Front Microbiol | 10.3389/fmicb.2021.677558 | 2021 | |
| Antifungal Properties of Streptomyces bacillaris S8 for Biological Control Applications. | Kim DR, Jeon CW, Kwak YS. | Plant Pathol J | 10.5423/ppj.nt.01.2024.0021 | 2024 | ||
| A Novel Finding: 2,4-Di-tert-butylphenol from Streptomyces bacillaris ANS2 Effective Against Mycobacterium tuberculosis and Cancer Cell Lines. | Kaari M, Joseph J, Manikkam R, Kalyanasundaram R, Sivaraj A, Anbalmani S, Murthy S, Sahu AK, Said M, Dastager SG, Ramasamy B. | Appl Biochem Biotechnol | 10.1007/s12010-023-04403-2 | 2023 | ||
| Tunicamycins from Marine-Derived Streptomyces bacillaris Inhibit MurNAc-Pentapeptide Translocase in Staphylococcus aureus. | Lee J, Hwang JY, Oh D, Oh DC, Park HG, Shin J, Oh KB. | Mar Drugs | 10.3390/md22070293 | 2024 | ||
| Removal of triphenylmethane dyes by Streptomyces bacillaris: A study on decolorization, enzymatic reactions and toxicity of treated dye solutions. | Adenan NH, Lim YY, Ting ASY. | J Environ Manage | 10.1016/j.jenvman.2022.115520 | 2022 | ||
| A novel microbial-derived family 19 endochitinase with exochitinase activity and its immobilization. | Xing A, Hu Y, Wang W, Secundo F, Xue C, Mao X. | Appl Microbiol Biotechnol | 10.1007/s00253-023-12523-2 | 2023 | ||
| Biochemical characterization and cleavage pattern analysis of a novel chitosanase with cellulase activity. | Su H, Sun J, Chu W, Yuan B, Mao X. | Appl Microbiol Biotechnol | 10.1007/s00253-022-11829-x | 2022 | ||
| Identification of a GDSL lipase from Streptomyces bacillaris and its application in the preparation of free astaxanthin. | Gao K, Wang X, Jiang H, Sun J, Mao X. | J Biotechnol | 10.1016/j.jbiotec.2020.10.009 | 2021 | ||
| Expression and Molecular Modification of Chitin Deacetylase from Streptomyces bacillaris. | Yin L, Wang Q, Sun J, Mao X. | Molecules | 10.3390/molecules28010113 | 2022 | ||
| Chemical Diversity and Ecological Origins of Anti-MRSA Metabolites from Actinomycetota. | Fernandes SP, de Almeida LLC, de Souza TA, de Oliveira GD, Silva MDS, Rodrigues-Junior VDS, Alves HDS, Cibulski SP. | Antibiotics (Basel) | 10.3390/antibiotics14111060 | 2025 | ||
| Pathogenicity | Inhibitory Effects of Nitrogenous Metabolites from a Marine-Derived Streptomyces bacillaris on Isocitrate Lyase of Candida albicans. | Chung B, Hwang JY, Park SC, Kwon OS, Cho E, Lee J, Lee HS, Oh DC, Shin J, Oh KB. | Mar Drugs | 10.3390/md20020138 | 2022 | |
| Microbiota Communities of Healthy and Bacterial Pustule Diseased Soybean. | Kim DR, Kim SH, Lee SI, Kwak YS. | Plant Pathol J | 10.5423/ppj.oa.05.2022.0067 | 2022 | ||
| Metabolism | Antibacterial Activity and Mode of Action of Lactoquinomycin A from Streptomyces bacillaris. | Chung B, Kwon OS, Shin J, Oh KB. | Mar Drugs | 10.3390/md19010007 | 2020 | |
| Characterization of novel cold-active chitin deacetylase for green production of bioactive chitosan. | Abd El-Ghany MN, Hamdi SA, Zahran AK, Abou-Taleb MA, Heikel AM, Abou El-Kheir MT, Farahat MG. | AMB Express | 10.1186/s13568-024-01804-2 | 2025 | ||
| Biotechnology | Versatile biocatalyst: lipase from Streptomyces gobitricini for ester synthesis and detergent innovation | Alzahrani A, Krayem N, Alonazi M, Al-Ghamdi J, Horchani H, Ben Bacha A. | Front Bioeng Biotechnol | 2025 | ||
| Metabolism | A new peptide isolated from a marine derived Streptomyces bacillaris. | Hu Y, MacMillan JB. | Nat Prod Commun | 10.1177/1934578x1200700224 | 2012 | |
| Bioactivities and sensory evaluation of Pu-erh teas made from three tea leaves in an improved pile fermentation process. | Chen YS, Liu BL, Chang YN. | J Biosci Bioeng | 10.1016/j.jbiosc.2009.11.004 | 2010 | ||
| Phylogeny | Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species. | Rong X, Huang Y. | Int J Syst Evol Microbiol | 10.1099/ijs.0.012419-0 | 2010 | |
| Correlation analysis between filamentous fungi and chemical compositions in a pu-erh type tea after a long-term storage. | Zhou B, Ma C, Ren X, Xia T, Zheng C, Liu X. | Food Sci Nutr | 10.1002/fsn3.1543 | 2020 | ||
| Phylogeny | Variation in Sodic Soil Bacterial Communities Associated with Different Alkali Vegetation Types. | Borsodi AK, Mucsi M, Krett G, Szabo A, Felfoldi T, Szili-Kovacs T. | Microorganisms | 10.3390/microorganisms9081673 | 2021 | |
| A Valuable Product of Microbial Cell Factories: Microbial Lipase. | Yao W, Liu K, Liu H, Jiang Y, Wang R, Wang W, Wang T. | Front Microbiol | 10.3389/fmicb.2021.743377 | 2021 | ||
| Biodegradation and Prospect of Polysaccharide from Crustaceans. | Qiu S, Zhou S, Tan Y, Feng J, Bai Y, He J, Cao H, Che Q, Guo J, Su Z. | Mar Drugs | 10.3390/md20050310 | 2022 | ||
| Pathogenicity | [Ultrastructural and biochemical changes in Mycobacterium rubrum and Streptomyces bacillaris cells exposed to the herbicide semeron]. | Poglazova MN, Emnova EE, Kodrian VA, Kostrikina NA, Svetlichnaia TP. | Mikrobiologiia | 1986 | ||
| Phenotypic and Genomic Characterization of Streptomyces pakalii sp. nov., a Novel Species with Anti-Biofilm and Anti-Quorum Sensing Activity in ESKAPE Bacteria. | Chavez-Hernandez M, Ortiz-Alvarez J, Morales-Jimenez J, Villa-Tanaca L, Hernandez-Rodriguez C. | Microorganisms | 10.3390/microorganisms11102551 | 2023 |
| #9674 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40598 |
| #18661 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive15044.20260601.11
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BacDive in 2025: the core database for prokaryotic strain data