Name: Streptomyces bacillaris DSM 40598
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15044

Type strain:

Species: Streptomyces bacillaris

Culture col. no.: DSM 40598, ATCC 15855, CBS 788.72, IFO 13487, INMI 445, ISP 5598, NBRC 13487, RIA 1448, RIA 336, JCM 4727, BCRC 15181, CGMCC 4.1584, KCTC 9018, LMG 8585, NRRL B-3038, VKM Ac-58

Strain history: KCC S-0727 <-- IFO 13487 <-- SAJ <-- ISP 5598 <-- RIA 336 <-- INMI 445.

NCBI tax ID(s): 68179 (species)

SI-ID 63610

ATCC 15855, IFO 13487, DSM 40598, JCM 4727, NRRL B-3038, VKM Ac-58, JCM 4917, LMG 8585, KCTC 9018, AS 4.1548, NBRC 13487, BCRC 15181, CCRC 15181, CGMCC 4.1548, CGMCC 4.1584, CBS 788.72

Other strains from Streptomyces bacillaris

S. bacillaris WC3068, DSM 40066, ATCC 19762, ...
S. bacillaris MP-1, DSM 40915
S. bacillaris STH00015(ZIMET), Q278-4, HKI 0015
S. bacillaris JCM 4992, INMI 448, VKM Ac-59

Section

Streptomyces bacillaris DSM 40598 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces bacillaris**
	Full Scientific Name (LPSN)	Streptomyces bacillaris (Krassilnikov 1958) Pridham 1970 (Approved Lists 1980)

	Synonym	"Actinomyces* bacillaris"*
	Synonym	Streptomyces griseobrunneus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #18661]	Colony color	Daffodil yellow (1007)
[Ref.: #18661]	Incubation period	10-14 days
[Ref.: #18661]	Cultivation medium used	ISP 2

[Ref.: #18661]	Colony color	Saffron yellow (1017)
[Ref.: #18661]	Incubation period	10-14 days
[Ref.: #18661]	Cultivation medium used	ISP 3

[Ref.: #18661]	Colony color	Colorless
[Ref.: #18661]	Incubation period	10-14 days
[Ref.: #18661]	Cultivation medium used	ISP 4

[Ref.: #18661]	Colony color	Colorless
[Ref.: #18661]	Incubation period	10-14 days
[Ref.: #18661]	Cultivation medium used	ISP 5

[Ref.: #18661]	Colony color	Colorless
[Ref.: #18661]	Incubation period	10-14 days
[Ref.: #18661]	Cultivation medium used	ISP 6

[Ref.: #18661]	Colony color	Colorless
[Ref.: #18661]	Incubation period	10-14 days
[Ref.: #18661]	Cultivation medium used	ISP 7

[Ref.: #18661]	Multicellular complex forming ability	yes
[Ref.: #18661]	Multicellular complex color	Cream
[Ref.: #18661]	Medium Name (multicellularity)	ISP 2

[Ref.: #18661]	Multicellular complex forming ability	yes
[Ref.: #18661]	Multicellular complex name	Aerial Mycelium
[Ref.: #18661]	Multicellular complex color	Cream
[Ref.: #18661]	Medium Name (multicellularity)	ISP 3

[Ref.: #18661]	Multicellular complex forming ability	yes
[Ref.: #18661]	Multicellular complex name	Aerial Mycelium
[Ref.: #18661]	Multicellular complex color	Cream
[Ref.: #18661]	Medium Name (multicellularity)	ISP 4

[Ref.: #18661]	Multicellular complex forming ability	no
[Ref.: #18661]	Medium Name (multicellularity)	ISP 5

[Ref.: #18661]	Multicellular complex forming ability	no
[Ref.: #18661]	Medium Name (multicellularity)	ISP 6

[Ref.: #18661]	Multicellular complex forming ability	yes
[Ref.: #18661]	Multicellular complex name	Aerial Mycelium
[Ref.: #18661]	Multicellular complex color	Cream
[Ref.: #18661]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9674]

Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9674]	growth	28 °C
[Ref.: #18661]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9674]	Temperature range	mesophilic
[Ref.: #18661]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18661]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18661]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18661]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18661]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18661]	mannitol ChEBI	+
[Ref.: #18661]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18661]	raffinose ChEBI	-
[Ref.: #18661]	rhamnose ChEBI	-
[Ref.: #18661]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18661]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18661]	179	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18661]	274	not determinedn.d.	+	+	+	+	+	+	-	+	+	+	+	-	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Central Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB184439 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18661]	Biosafety level	1	German classification
[Ref.: #9674]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces bacillaris strain KCTC 9018 16S ribosomal RNA gene, partial sequence	AY999817	1419	ENA	68179 tax ID
[Ref.: #9674]	Streptomyces bacillaris gene for 16S rRNA, partial sequence, strain: NBRC 13487	AB184439	1468	ENA	68179 tax ID
[Ref.: #20218]	Streptomyces bacillaris strain DSM 40598 16S ribosomal RNA gene, partial sequence	GU383169	781	ENA	68179 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces bacillaris ATCC 15855	GCA_003268675	complete	GenBank	68179 tax ID
[Ref.: #66792]	Streptomyces bacillaris strain ATCC 15855	68179.3	complete	PATRIC	68179 tax ID	*
[Ref.: #66792]	Streptomyces bacillaris ATCC 15855	2860667798	complete	JGI IMG/M	68179 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces bacillaris strain ATCC 15855 PATRIC: 68179.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces bacillaris strain ATCC 15855 PATRIC: 68179.3
[Ref.: #69480]	gram-positive	yes	89.778	no
[Ref.: #69480]	anaerobic	no	98.877	no
[Ref.: #69480]	halophile	no	91.227	no
[Ref.: #69480]	spore-forming	yes	93.337	no
[Ref.: #69480]	glucose-util	yes	89.092	yes
[Ref.: #69480]	thermophile	no	99.401	no
[Ref.: #69480]	flagellated	no	97.251	no
[Ref.: #69480]	motile	no	93.889	no
[Ref.: #69480]	aerobic	yes	92.358	no
[Ref.: #69480]	glucose-ferment	no	87.982	no

Availability in culture collections External links

[Ref.: #9674]

Culture collection no.

DSM 40598, ATCC 15855, CBS 788.72, IFO 13487, INMI 445, ISP 5598, NBRC 13487, RIA 1448, RIA 336, JCM 4727, BCRC 15181, CGMCC 4.1584, KCTC 9018, LMG 8585, NRRL B-3038, VKM Ac-58

[Ref.: #84150]

SI-ID 63610

References

#9674

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40598

#18661

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84150

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID63610.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces bacillaris strain ATCC 15855

Streptomyces bacillaris strain ATCC 15855

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