Name: Beggiatoa leptomitoformis D-401
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 139812

Type strain:

Species: Beggiatoa leptomitoformis

Strain Designation: D-401

Culture col. no.: DSM 14945

Strain history: <- G. A. Dubinina, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; D-401

NCBI tax ID(s): 288004 (species)

SI-ID 398418

DSM 14945

Other strains from Beggiatoa leptomitoformis

B. leptomitoformis D-402, DSM 14946, UNIQEM U 779 (type strain)

Section

Beggiatoa leptomitoformis D-401 is a mesophilic bacterium of the family Beggiatoaceae.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Beggiatoaceae*
	Genus	*Beggiatoa*
	Species	**Beggiatoa leptomitoformis**
	Full Scientific Name (LPSN)	Beggiatoa leptomitoformis Dubinina et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42420]

Culture medium

EGGC (DSMZ Medium 1191)

[Ref.: #42420]

Culture medium growth

[Ref.: #42420]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42420]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42420]			growth	25 °C

[Ref.: #42420]

Temperature range

mesophilic

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42420]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Beggiatoa leptomitoformis D-401	GCA_002849755	complete	GenBank	288004 tax ID	*
[Ref.: #66792]	Beggiatoa leptomitoformis strain D-401	288004.3		PATRIC	288004 tax ID	*
[Ref.: #66792]	Beggiatoa leptomitoformis D-401	2788500402	complete	JGI IMG/M	288004 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Beggiatoa leptomitoformis D-401 NCBI: GCA_002849755.1
[Ref.: #69480]	flagellated	no	85.655	no
[Ref.: #69480]	gram-positive	no	99.172	no
[Ref.: #69480]	anaerobic	no	91.348	no
[Ref.: #69480]	aerobic	no	74.593	no
[Ref.: #69480]	halophile	no	91.666	no
[Ref.: #69480]	spore-forming	no	93.717	no
[Ref.: #69480]	thermophile	no	92.819	yes
[Ref.: #69480]	glucose-util	no	51.709	no
[Ref.: #69480]	motile	no	78.417	no
[Ref.: #69480]	glucose-ferment	no	88.886	no
[Ref.: #69480]	flagellated	no	85.655	no
[Ref.: #69480]	gram-positive	no	99.172	no
[Ref.: #69480]	anaerobic	no	91.348	no
[Ref.: #69480]	aerobic	no	74.593	no
[Ref.: #69480]	halophile	no	91.666	no
[Ref.: #69480]	spore-forming	no	93.717	no
[Ref.: #69480]	thermophile	no	92.819	yes
[Ref.: #69480]	glucose-util	no	51.709	no
[Ref.: #69480]	motile	no	78.417	no
[Ref.: #69480]	glucose-ferment	no	88.886	no

Availability in culture collections External links

[Ref.: #42420]

Culture collection no.

DSM 14945

[Ref.: #96255]

SI-ID 398418

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomics of Beggiatoa leptomitoformis Strains D-401 and D-402(T) with Contrasting Physiology but Extremely High Level of Genomic Identity.	Rudenko TS, Tarlachkov SV, Shatskiy ND, Grabovich MY	Microorganisms	10.3390/microorganisms8060928	2020	*
Genetics	Complete Genome Sequence of the Freshwater Bacterium Beggiatoa leptomitoformis Strain D-401.	Fomenkov A, Sun Z, Vincze T, Dubinina G, Orlova M, Tarlachkov SV, Anton BP, Grabovich MY, Roberts RJ	Genome Announc	10.1128/genomeA.00311-18	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42420

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14945

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96255

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398418.1 )

* These data were automatically processed and therefore are not curated

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