Name: Ensifer alkalisoli YIC 4027
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133290

Type strain:

Species: Ensifer alkalisoli

Culture col. no.: YIC 4027, HAMBI 3655, LMG 29286

NCBI tax ID(s): 1752398 (species)

Section

Ensifer alkalisoli YIC 4027 is an aerobe, Gram-negative, motile bacterium that forms circular colonies.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Ensifer*
	Species	**Ensifer alkalisoli**
	Full Scientific Name (LPSN)	Ensifer alkalisoli Li et al. 2016

Synonym

Sinorhizobium alkalisoli

Information on morphological and physiological properties Morphology

[Ref.: #25091]	Gram stain	negative

[Ref.: #25091]	Cell length	1.05-1.17 µm

[Ref.: #25091]	Cell width	0.39-0.43 µm

[Ref.: #25091]	Cell shape	rod-shaped

[Ref.: #25091]	Motility	yes

[Ref.: #25091]	Colony size	1.0-3.0 mm
[Ref.: #25091]	Colony color	white-opaque
[Ref.: #25091]	Colony shape	circular
[Ref.: #25091]	Incubation period	2 days
[Ref.: #25091]	Cultivation medium used	YMA (yeast malt agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25091]

Culture medium

YMA (yeast malt agar)

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Culture medium growth

	pH	Kind of pH		pH
[Ref.: #25091]			optimum	7
[Ref.: #25091]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25091]

Oxygen tolerance

aerobe

[Ref.: #25091]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25091]		NaCl		growth	1.0-4.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25091]	(-)-quinic acid ChEBI	+	carbon source
[Ref.: #25091]	2,3-butanediol ChEBI	-	carbon source
[Ref.: #25091]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #25091]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #25091]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #25091]	2-oxopentanoate ChEBI	-	carbon source
[Ref.: #25091]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #25091]	4-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #25091]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #25091]	acetate ChEBI	-	carbon source
[Ref.: #25091]	alpha-cyclodextrin ChEBI	-	carbon source
[Ref.: #25091]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #25091]	bromosuccinate ChEBI	-	carbon source
[Ref.: #25091]	carnitine ChEBI	+	carbon source
[Ref.: #25091]	cellobiose ChEBI	+	carbon source
[Ref.: #25091]	cis-aconitate ChEBI	+	carbon source
[Ref.: #25091]	citrate ChEBI	-	carbon source
[Ref.: #25091]	D-alanine ChEBI	-	carbon source
[Ref.: #25091]	D-arabitol ChEBI	+	carbon source
[Ref.: #25091]	D-fructose ChEBI	+	carbon source
[Ref.: #25091]	D-galactonic acid lactone ChEBI	-	carbon source
[Ref.: #25091]	D-galactose ChEBI	+	carbon source
[Ref.: #25091]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #25091]	D-glucarate ChEBI	-	carbon source
[Ref.: #25091]	D-gluconate ChEBI	+	carbon source
[Ref.: #25091]	D-glucosaminic acid ChEBI	+	carbon source
[Ref.: #25091]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #25091]	D-glucuronate ChEBI	-	carbon source
[Ref.: #25091]	D-mannitol ChEBI	+	carbon source
[Ref.: #25091]	D-mannose ChEBI	+	carbon source
[Ref.: #25091]	D-psicose ChEBI	-	carbon source
[Ref.: #25091]	D-serine ChEBI	-	carbon source
[Ref.: #25091]	D-sorbitol ChEBI	+	carbon source
[Ref.: #25091]	dextrin ChEBI	+	carbon source
[Ref.: #25091]	erythritol ChEBI	-	carbon source
[Ref.: #25091]	ethanolamine ChEBI	-	carbon source
[Ref.: #25091]	ethylamine ChEBI	-	carbon source
[Ref.: #25091]	formate ChEBI	-	carbon source
[Ref.: #25091]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #25091]	gentiobiose ChEBI	+	carbon source
[Ref.: #25091]	glucose 1-phosphate ChEBI	-	carbon source
[Ref.: #25091]	glucuronamide ChEBI	-	carbon source
[Ref.: #25091]	glycerol ChEBI	+	carbon source
[Ref.: #25091]	glycerol 1-phosphate ChEBI	-	carbon source
[Ref.: #25091]	glycyl L-aspartic acid ChEBI	-	carbon source
[Ref.: #25091]	glycyl-l-glutamate ChEBI	-	carbon source
[Ref.: #25091]	hydroxyproline ChEBI	+	carbon source
[Ref.: #25091]	inosine ChEBI	-	carbon source
[Ref.: #25091]	itaconate ChEBI	-	carbon source
[Ref.: #25091]	L-alaninamide ChEBI	-	carbon source
[Ref.: #25091]	L-alanine ChEBI	+	carbon source
[Ref.: #25091]	L-alanylglycine ChEBI	-	carbon source
[Ref.: #25091]	L-arabinose ChEBI	-	carbon source
[Ref.: #25091]	L-asparagine ChEBI	+	carbon source
[Ref.: #25091]	L-aspartate ChEBI	+	carbon source
[Ref.: #25091]	L-fructose ChEBI	+	carbon source
[Ref.: #25091]	L-glutamate ChEBI	+	carbon source
[Ref.: #25091]	L-histidine ChEBI	-	carbon source
[Ref.: #25091]	L-leucine ChEBI	-	carbon source
[Ref.: #25091]	L-ornithine ChEBI	-	carbon source
[Ref.: #25091]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #25091]	L-proline ChEBI	+	carbon source
[Ref.: #25091]	L-pyroglutamic acid ChEBI	+	carbon source
[Ref.: #25091]	L-rhamnose ChEBI	+	carbon source
[Ref.: #25091]	L-serine ChEBI	-	carbon source
[Ref.: #25091]	L-threonine ChEBI	-	carbon source
[Ref.: #25091]	lactate ChEBI	+	carbon source
[Ref.: #25091]	lactulose ChEBI	-	carbon source
[Ref.: #25091]	malonate ChEBI	-	carbon source
[Ref.: #25091]	maltose ChEBI	+	carbon source
[Ref.: #25091]	melibiose ChEBI	+	carbon source
[Ref.: #25091]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #25091]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #25091]	monomethyl succinate ChEBI	-	carbon source
[Ref.: #25091]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #25091]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #25091]	propionate ChEBI	+	carbon source
[Ref.: #25091]	putrescine ChEBI	-	carbon source
[Ref.: #25091]	raffinose ChEBI	+	carbon source
[Ref.: #25091]	ribitol ChEBI	+	carbon source
[Ref.: #25091]	sebacic acid ChEBI	-	carbon source
[Ref.: #25091]	succinamate ChEBI	-	carbon source
[Ref.: #25091]	succinate ChEBI	+	carbon source
[Ref.: #25091]	sucrose ChEBI	+	carbon source
[Ref.: #25091]	thymidine ChEBI	-	carbon source
[Ref.: #25091]	trehalose ChEBI	+	carbon source
[Ref.: #25091]	turanose ChEBI	+	carbon source
[Ref.: #25091]	tween 40 ChEBI	-	carbon source
[Ref.: #25091]	tween 80 ChEBI	-	carbon source
[Ref.: #25091]	uridine ChEBI	-	carbon source
[Ref.: #25091]	urocanic acid ChEBI	+	carbon source
[Ref.: #25091]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #25091]	ampicillin ChEBI	yes	5.0-300.0	µg/mL
[Ref.: #25091]	chloramphenicol ChEBI				yes	300.0.	µg/mL
[Ref.: #25091]	erythromycin ChEBI	yes	300	µg/mL
[Ref.: #25091]	erythromycin ChEBI				yes	50.0-100.0	µg/mL
[Ref.: #25091]	kanamycin ChEBI				yes	5	µg/mL
[Ref.: #25091]	neomycin ChEBI	yes	5	µg/mL
[Ref.: #25091]	streptomycin ChEBI	yes	5	µg/mL

	Metabolite production	Metabolite	Production
[Ref.: #25091]		acetoin ChEBI	no
[Ref.: #25091]		hydrogen sulfide ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #25091]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25091]	amylase	-
[Ref.: #25091]	catalase	-	1.11.1.6
[Ref.: #25091]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence KX668272 (>99% sequence identity) for Sinorhizobium from Microbeatlas

Aquatic Samples	1757
Soil Samples	5488
Animal Samples	1189
Plant Samples	2143
Total Samples	10577

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25091]	Ensifer sp. YIC4027 16S ribosomal RNA gene, partial sequence	KX668272	1449	GenBank	1752398 tax ID

[Ref.: #25091]

GC-content

62.2 mol%

Availability in culture collections External links

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Culture collection no.

YIC 4027, HAMBI 3655, LMG 29286

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	The genome of Ensifer alkalisoli YIC4027 provides insights for host specificity and environmental adaptations.	Dang X, Xie Z, Liu W, Sun Y, Liu X, Zhu Y, Staehelin C	BMC Genomics	10.1186/s12864-019-6004-7	2019	*
Phylogeny	Ensifer alkalisoli sp. nov. isolated from root nodules of Sesbania cannabina grown in saline-alkaline soils.	Li Y, Yan J, Yu B, Wang ET, Li X, Yan H, Liu W, Xie Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001510	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25091

Y. Y. Li, J.,Yu, B.,Wang, E. T.,Li, X.,Yan, H.,Liu, W.,Xie, Z.: Ensifer alkalisoli sp. nov. isolated from root nodules of Sesbania cannabina grown in saline-alkaline soils. IJSEM 66: 5294 - 5300 2016 ( DOI 10.1099/ijsem.0.001510 , PubMed 27653171 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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