Strain identifier

BacDive ID: 133114

Type strain: Yes

Species: Pedobacter lithocola

Culture col. no.: CCM 8691, LMG 29685

NCBI tax ID(s): 1908239 (species)

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Pedobacter lithocola CCM 8691 is a bacterium of the family Sphingobacteriaceae.

  1. Bacteria
  • Information on physiology and metabolism Physiology and metabolismarrow_down
    • Fatty acid profile
    Metadata FA analysis
    Type of FA analysis whole cell analysis
    Incubation medium R2A (Oxoid)
    Agar/liquid agar
    Incubation temperature (°C) 20
    Incubation time (d) 2
    Incubation pH
    Incubation oxygen condition
    Treatment/condition
    Software version Sherlock 6.2
    Library/peak naming table RTSBA 6.21
    System MIS MIDI
    Instrument
    Method/protocol Sasser 1990
    Cutoff value 1.00
    Reference [Ref.: #25302]
    Fatty acidarrow to sort Percentagearrow to sort
    C16:1ω7c / C16:1ω6c 28.2
    C16:0 iso 3OH 9.2
    C15:0 anteiso 8.4
    C15:0 iso 8.4
    C17:0 iso 3OH 7.7
    C17:0 2OH 7.2
    C16:1ω5c 3.7
    C16:1 iso H 3.5
    C16:0 10-methyl / iso-C17:1ω9c 3.3
    C15:1ω6c 3.3
    C17:1 anteiso ω9c 3.3
    C16:0 iso 2.9
    C15:0 2OH 2.1
    C15:0 iso 3OH 1.4
    C17:1ω6c 1.4
    C16:0 3OH 1.1

  • Availability in culture collections External linksarrow_down
    • [Ref.: #25302] Culture collection no. CCM 8691, LMG 29685
    Literature:
    Topicarrow to sort Titlearrow to sort Authorsarrow to sort Journalarrow to sort DOIarrow to sort Yeararrow to sort
    Phylogeny Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment. Svec P, Kralova S, Busse HJ, Kleinhagauer T, Pantucek R, Maslanova I, Cnockaert M, Vandamme P, Stankova E, Gelbicova T, Holochova P, Bartak M, Kyrova K, Sedlacek I Int J Syst Evol Microbiol 10.1099/ijsem.0.001749 2017 *
    Phylogeny Pedobacter mucosus sp. nov., isolated from a soil sample of glacier foreland in Austre Lovenbreen, Arctic. Huang J, Peng X, Qin K, Liu Y, Niu J, Liu J, Dong J, Zhang Y, Peng F Int J Syst Evol Microbiol 10.1099/ijsem.0.005448 2022 *

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