Pseudomonas syringae (DSM 50312, CIP 104379, DSM 60231)

Name: Pseudomonas syringae (DSM 50312, CIP 104379, DSM 60231)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13039

Type strain

Strain Designation J1

Culture col. no. DSM 50312 CIP 104379 DSM 60231 J1

NCBI tax ID(s) 317

Special Collections DSMZ CIP

History <- T. Uozuni; J1

Links

Pseudomonas syringae J1 is a mesophilic plant pathogen of the family Pseudomonadaceae.

mesophilic plant pathogen

Name and taxonomic classification

SI-ID 50946

CIP 104379,DSM 50312,DSM 60231

@ref 20215

Last LPSN update 2026-02-09 11:21:01

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas syringae

Full scientific name Pseudomonas syringae van Hall 1902 (Approved Lists 1980)

BacDive ID	Other strains from **Pseudomonas syringae** (77)	Type strain
13024	P. syringae DSM 10604, ATCC 19310, ICMP 3023, ICPB PS255, ... (type strain)
24420	P. syringae DSM 6693, NCPPB 281 (type strain)
13020	P. syringae B-301D, B301D, DSM 1241
13021	P. syringae Ps268, DSM 1242
13022	P. syringae 16.1, DSM 1856, ATCC 11527, DSM 60229
13023	P. syringae DSM 5176, ATCC 39254
13025	P. syringae DSM 50252, ATCC 10205, DSM 60113
13026	P. syringae PA 13, DSM 50255, ATCC 9004, DSM 60116, ICPB ...
13027	P. syringae 248, 286, DSM 50256, DSM 60117, NCPPB 248, ...
13028	P. syringae 247, DSM 50261, DSM 60121
13029	P. syringae PC 17, DSM 50262, ATCC 9005, DSM 60122
13030	P. syringae 6, DSM 50272, ATCC 11965, DSM 60136
13031	P. syringae N.A.3, DSM 50277, DSM 60078, NCPPB 560
13032	P. syringae DSM 50281, DSM 60308
13033	P. syringae DSM 50292, ATCC 10860, DSM 60224
13034	P. syringae 133, 281, DSM 50293, ATCC 19306, DSM 60225, ...
13035	P. syringae MP50, DSM 50302, DSM 60052
13036	P. syringae MP 65, DSM 50303, DSM 60062
13037	P. syringae 44/2b, DSM 50307, DSM 60091, NCPPB 1083
13038	P. syringae 221, 283, DSM 50311, DSM 60230, NCPPB 221
13040	P. syringae 685, DSM 50315, CIP 104380, DSM 60407
13041	P. syringae DSM 50335, DSM 60568, NCPPB 2666
13042	P. syringae I 201, DSM 50336, DSM 60570
23205	P. syringae DSM 50291, ATCC 11043, DSM 60223, NCPPB 298, ...
100172	P. syringae
24421	P. syringae DSM 50274, ATCC 10859, DSM 60217
130572	P. syringae CRAPAV013, PsaveCRAPAV013, DSM 100307
142732	P. syringae CCUG 14280, NCPPB 2686, LMG 5085
142733	P. syringae CCUG 14281, ICMP 6009
142734	P. syringae CCUG 14282, NCPPB 52, ATCC 19304, LMG 2245, ...
143391	P. syringae CCUG 18842, CCM 2870
146289	P. syringae CCUG 30817, NCPPB 617, LMG 5464
150021	P. syringae CCUG 38852, LMG 5066
153362	P. syringae CCUG 49341, ICMP 459, LMG 5059, NCPPB 871
153363	P. syringae CCUG 49342, ATCC 19513, LMG 5070
157446	P. syringae IMI 347718
157447	P. syringae IMI 347719
157448	P. syringae IMI 347722
157449	P. syringae IMI 348465
157450	P. syringae IMI 348581
157451	P. syringae IMI 348582
157452	P. syringae IMI 349135
157453	P. syringae IMI 349177
157454	P. syringae IMI 349181
157455	P. syringae IMI 349187
157456	P. syringae IMI 349193
157457	P. syringae IMI 383014
157458	P. syringae IMI 389304
157459	P. syringae IMI 349305
157460	P. syringae IMI 349258
157461	P. syringae IMI 349270
157462	P. syringae IMI 349310
157463	P. syringae IMI 349273
157464	P. syringae IMI 347491
157465	P. syringae IMI 349266
157466	P. syringae IMI 349274
157467	P. syringae IMI 349320
157468	P. syringae IMI 347446
157469	P. syringae IMI 349191
157470	P. syringae IMI 349286
157471	P. syringae IMI 349217
157472	P. syringae IMI 349230
157473	P. syringae IMI 347727
157474	P. syringae IMI 358465
157475	P. syringae IMI 347447
157476	P. syringae IMI 349339
157477	P. syringae IMI 347536
157478	P. syringae IMI 347717
157479	P. syringae IMI 347448
157480	P. syringae IMI 347732
157481	P. syringae IMI 347733
157482	P. syringae IMI 349170
157483	P. syringae IMI 349204
157484	P. syringae IMI 349392
157485	P. syringae IMI 349393
161472	P. syringae JCM 14314, ATCC 7389, ICMP 3881, ICMP 5036, ...
161473	P. syringae JCM 14317, ATCC 11365, CFBP 1512, ICMP 3079

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12708	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
12708	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
12708	GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54)	Medium recipe at MediaDive	Name: GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54) Composition: CaCO3 20.0 g/l Glucose 20.0 g/l Agar 17.0 g/l Yeast extract 10.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12708	positive	growth	26	mesophilic

Physiology and metabolism

Compound production

12708

Compoundpoly(ß-hydroxyoctanoic acid)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	quinate degradation	100	2 of 2
66794	pentose phosphate pathway	100	11 of 11
66794	Entner Doudoroff pathway	100	10 of 10
66794	alginate biosynthesis	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	adipate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	L-lactaldehyde degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	biotin biosynthesis	100	4 of 4
66794	starch degradation	100	10 of 10
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	ribulose monophosphate pathway	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	taurine degradation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	folate polyglutamylation	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	NAD metabolism	94.44	17 of 18
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	vitamin B6 metabolism	90.91	10 of 11
66794	chorismate metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	arginine metabolism	87.5	21 of 24
66794	flavin biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutathione metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	propanol degradation	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	urea cycle	84.62	11 of 13
66794	vitamin B12 metabolism	82.35	28 of 34
66794	proline metabolism	81.82	9 of 11
66794	3-chlorocatechol degradation	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	alanine metabolism	79.31	23 of 29
66794	cysteine metabolism	77.78	14 of 18
66794	d-mannose degradation	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	lipid metabolism	77.42	24 of 31
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	ketogluconate metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	non-pathway related	73.68	28 of 38
66794	degradation of sugar acids	72	18 of 25
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	degradation of pentoses	67.86	19 of 28
66794	lysine metabolism	66.67	28 of 42
66794	allantoin degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	IAA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	polyamine pathway	65.22	15 of 23
66794	oxidative phosphorylation	64.84	59 of 91
66794	pyrimidine metabolism	64.44	29 of 45
66794	d-xylose degradation	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	sulfate reduction	61.54	8 of 13
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	vitamin K metabolism	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	tyrosine metabolism	57.14	8 of 14
66794	phenol degradation	55	11 of 20
66794	ascorbate metabolism	54.55	12 of 22
66794	carotenoid biosynthesis	54.55	12 of 22
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	cyclohexanol degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	selenocysteine biosynthesis	50	3 of 6
66794	androgen and estrogen metabolism	50	8 of 16
66794	carnitine metabolism	50	4 of 8
66794	pantothenate biosynthesis	50	3 of 6
66794	arachidonic acid metabolism	50	9 of 18
66794	kanosamine biosynthesis II	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	metabolism of disaccharids	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	degradation of hexoses	44.44	8 of 18
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	coenzyme M biosynthesis	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	enterobactin biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	myo-inositol biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	cholesterol biosynthesis	27.27	3 of 11
66794	chlorophyll metabolism	22.22	4 of 18

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
12708	-	-	-	-	-	+	+	-	+	+	-	+	-	-	+	+	-	+	+	-	+

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
12708		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome-based predictions

Literature

References

#12708	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50312
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68369	Automatically annotated from API 20NE .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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