Name: Paenibacillus glucanolyticus S93
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11495

Type strain:

Species: Paenibacillus glucanolyticus

Strain Designation: S93, B-14679

Culture col. no.: DSM 5162, ATCC 49278, IFO 15330, NBRC 15330, NCIB 12809, CCUG 28523, NRRL B-14679, CIP 106935, LMG 12239, NCIMB 12809

Strain history: CIP <- 2001, CCUG <- 1991, L.K. Nakamura, NRRL, Peoria, USA: strain B-14679

NCBI tax ID(s): 1349777 (strain), 59843 (species)

SI-ID 1122

LMG 11156, ATCC 49278, DSM 5162, IFO 15330, LMG 12239, NCIMB 12809, NCIB 12809, CCUG 28523, NRRL B-14679, CIP 106935, KCTC 3395, NBRC 15330, BCRC 15908, CCRC 15908, BCRC 17273, CCRC 17273, VTT E-011776

Other strains from Paenibacillus glucanolyticus

P. glucanolyticus E28, DSM 5188, NCIB 12810
P. glucanolyticus FR1-105, DSM 30733
P. glucanolyticus T2_9, DSM 31002
P. glucanolyticus CCUG 57351
P. glucanolyticus CCUG 57991
P. glucanolyticus P073 TypA, DSM 108881
P. glucanolyticus P163, DSM 108882
P. glucanolyticus K25-7, DSM 109495
P. glucanolyticus FH2_2, DSM 110118
P. glucanolyticus Arbex 2020, R7_C3_IIIWC, DSM 110297

Section

Paenibacillus glucanolyticus S93 is an aerobe, spore-forming, mesophilic bacterium of the family Paenibacillaceae.

motile
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus glucanolyticus**
	Full Scientific Name (LPSN)	Paenibacillus glucanolyticus (Alexander and Priest 1989) Shida et al. 1997

Synonym

Bacillus glucanolyticus

Information on morphological and physiological properties Morphology

[Ref.: #119650]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #119650]	Cell shape	rod-shaped

[Ref.: #119650]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.115

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1939]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #1939]

Culture medium growth

[Ref.: #1939]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1939]

Culture medium composition

expand / minimize

[Ref.: #37372]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #37372]

Culture medium growth

[Ref.: #37372]

Culture medium composition

expand / minimize

[Ref.: #119650]

Culture medium

CIP Medium 29

[Ref.: #119650]

Culture medium growth

[Ref.: #119650]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119650]

Culture medium

CIP Medium 72

[Ref.: #119650]

Culture medium growth

[Ref.: #119650]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1939]		growth	25-30 °C
[Ref.: #37372]		growth	30 °C
[Ref.: #49269]		growth	30 °C
[Ref.: #119650]		growth	30-45 °C
[Ref.: #119650]	no	growth	10 °C
[Ref.: #119650]	no	growth	55 °C

[Ref.: #1939]	Temperature range	mesophilic
[Ref.: #37372]	Temperature range	mesophilic
[Ref.: #49269]	Temperature range	mesophilic
[Ref.: #119650]	Temperature range	psychrophilic
[Ref.: #119650]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #119650]			growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #49269]	Oxygen tolerance	aerobe
[Ref.: #119650]	Oxygen tolerance	facultative anaerobe

[Ref.: #119650]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %98
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #1939]	Name of produced compound	ß-1,4 glucanase
[Ref.: #1939]	Name of produced compound	ß-1,3 glucanase
[Ref.: #1939]	Name of produced compound	ß-1,6 glucanase

	Salt	Tested relation		Salt conc.
[Ref.: #119650]	NaCl		growth	0-6	%
[Ref.: #119650]	NaCl	no	growth	8	%
[Ref.: #119650]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119650]	citrate ChEBI	-	carbon source
[Ref.: #119650]	esculin ChEBI	+	hydrolysis
[Ref.: #119650]	hippurate ChEBI	-	hydrolysis
[Ref.: #119650]	nitrate ChEBI	+	reduction
[Ref.: #119650]	nitrate ChEBI	+	respiration
[Ref.: #119650]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119650]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #119650]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119650]		acetoin ChEBI	-
[Ref.: #119650]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #119650]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119650]	amylase	+
[Ref.: #119650]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119650]	caseinase	-	3.4.21.50
[Ref.: #119650]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119650]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119650]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #119650]	gelatinase	-
[Ref.: #119650]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119650]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119650]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119650]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119650]	oxidase	+
[Ref.: #119650]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119650]	tryptophan deaminase	-
[Ref.: #119650]	tween esterase	-
[Ref.: #119650]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119650]	1916	not determinedn.d.	+	+	+	+	+	-	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119650]	9922	-	-	+	+	-	+	-	-	-	-	-	+	-	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB073189 (>99% sequence identity) for Paenibacillus glucanolyticus subclade from Microbeatlas

Aquatic Samples	255
Soil Samples	721
Animal Samples	796
Plant Samples	289
Total Samples	2061

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1939]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119650]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Paenibacillus glucanolyticus gene for 16S rRNA, partial sequence	AB073189	1535	ENA	59843 tax ID	*
[Ref.: #20218]	Paenibacillus glucanolyticus DNA for 16S rRNA	D78470	1440	ENA	59843 tax ID	*
[Ref.: #20218]	Paenibacillus glucanolyticus gene for 16S rRNA, partial sequence, strain: NBRC 15330	AB680838	1481	ENA	59843 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus glucanolyticus NBRC 15330	GCA_004000885	contig	GenBank	1349777 tax ID	*
[Ref.: #66792]	Paenibacillus glucanolyticus NBRC 15330	1349777.4	wgs	PATRIC	1349777 tax ID	*
[Ref.: #66792]	Paenibacillus glucanolyticus strain 5162	59843.4	complete	PATRIC	59843 tax ID	*
[Ref.: #66792]	Paenibacillus glucanolyticus DSM 5162	2687453498	complete	JGI IMG/M	59843 tax ID	*
[Ref.: #66792]	Paenibacillus glucanolyticus DSM 5162	GCA_001632305	chromosome	GenBank	59843 tax ID	*

[Ref.: #1939]

GC-content

49.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus glucanolyticus strain 5162 PATRIC: 59843.9
[Ref.: #69481]	spore-forming	yes	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus glucanolyticus strain 5162 PATRIC: 59843.4
[Ref.: #69480]	gram-positive	yes	81.808	no
[Ref.: #69480]	anaerobic	no	98.519	no
[Ref.: #69480]	halophile	no	77.278	no
[Ref.: #69480]	spore-forming	yes	97.01	no
[Ref.: #69480]	glucose-util	yes	89.407	no
[Ref.: #69480]	thermophile	no	99.697	yes
[Ref.: #69480]	flagellated	yes	75.785	no
[Ref.: #69480]	aerobic	yes	90.471	yes
[Ref.: #69480]	motile	yes	92.542	no
[Ref.: #69480]	glucose-ferment	no	85.867	no

Availability in culture collections External links

[Ref.: #1939]

Culture collection no.

DSM 5162, ATCC 49278, IFO 15330, NBRC 15330, NCIB 12809, CCUG 28523, NRRL B-14679, CIP 106935, LMG 12239, NCIMB 12809

[Ref.: #80728]

SI-ID 1122

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus solani sp. nov., isolated from potato rhizosphere soil.	Liu B, Liu GH, Sengonca C, Schumann P, Lan JL, Chen DJ, Cui WD, Lin NQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001378	2016	*
Phylogeny	Paenibacillus zeae sp. nov., isolated from maize (Zea mays L.) seeds.	Liu Y, Zhai L, Wang R, Zhao R, Zhang X, Chen C, Cao Y, Cao Y, Xu T, Ge Y, Zhao J, Cheng C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000608	2015	*
Phylogeny	Paenibacillus qingshengii sp. nov., isolated from a lead-zinc tailing.	Chen L, Wang L, Sheng XF	Int J Syst Evol Microbiol	10.1099/ijs.0.000232	2015	*

References

#1939

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5162

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37372 ; Curators of the CIP;
#49269 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28523

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80728

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1122.1 )

#119650 Collection of Institut Pasteur ; Curators of the CIP; CIP 106935
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paenibacillus glucanolyticus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Paenibacillus glucanolyticus strain 5162

Paenibacillus glucanolyticus strain 5162

Change proposal

Change proposal