Rhodococcus globerulus 544 is an obligate aerobe, spore-forming, Gram-positive bacterium of the family Nocardiaceae.
spore-forming Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Nocardiaceae |
| Genus Rhodococcus |
| Species Rhodococcus globerulus |
| Full scientific name Rhodococcus globerulus Goodfellow et al. 1985 |
| Synonyms (2) |
| BacDive ID | Other strains from Rhodococcus globerulus (6) | Type strain |
|---|---|---|
| 10990 | R. globerulus R56, DSM 43953, ATCC 25711, CIP 104653, IMET ... | |
| 10992 | R. globerulus 308-97, PWD8, SbaT1, DSM 44306 | |
| 10993 | R. globerulus MAWB, DSM 44520 | |
| 10994 | R. globerulus MAWE, DSM 44521 | |
| 10995 | R. globerulus MAWA, DSM 44519 | |
| 24243 | R. globerulus 97-406, PWD30, DSM 44310 |
| @ref: | 11425 |
| multimedia content: | DSM_43954-1.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_43954-1.jpg |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref: | 11425 |
| multimedia content: | DSM_43954.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_43954.jpg |
| caption: | Medium 535 28°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11425 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 11425 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 19622 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19622 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 19622 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 19622 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 35631 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 119643 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 19622 | 22599 ChEBI | arabinose | - | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 19622 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | - | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 119643 | 4853 ChEBI | esculin | - | hydrolysis | |
| 19622 | 28757 ChEBI | fructose | + | ||
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 19622 | 17234 ChEBI | glucose | - | ||
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 119643 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 19622 | 29864 ChEBI | mannitol | + | ||
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 19622 | 17268 ChEBI | myo-inositol | - | ||
| 119643 | 17632 ChEBI | nitrate | + | reduction | |
| 119643 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 19622 | 16634 ChEBI | raffinose | - | ||
| 19622 | 26546 ChEBI | rhamnose | - | ||
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 19622 | 17992 ChEBI | sucrose | - | ||
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 19622 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119643 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 119643 | amylase | - | ||
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 119643 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 119643 | caseinase | - | 3.4.21.50 | |
| 119643 | catalase | + | 1.11.1.6 | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 119643 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 119643 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119643 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 119643 | oxidase | - | ||
| 119643 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 119643 | urease | + | 3.5.1.5 | |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119643 | not determinedn.d. | - | - | +/- | - | +/- | - | - | - | - | - | - | - | - | - | - | - | +/- | +/- | +/- | +/- | +/- | +/- | +/- | +/- | +/- | - | - | +/- | - | +/- | - | +/- | +/- | - | +/- | - | +/- | - | - | - | - | - | - | +/- | +/- | +/- | - | - | +/- |
Global distribution of 16S sequence X80619 (>99% sequence identity) for Nocardiaceae from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 67770 | ASM189480v1 assembly for Rhodococcus globerulus NBRC 14531 | contig | 1219016 | 73.18 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Rhodococcus globerulus strain DSM 43954 16S ribosomal RNA gene, partial sequence | KF410361 | 1354 | 33008 | ||
| 20218 | Rhodococcus globerulus 16S rRNA gene, strain DSM4954T | X80619 | 1473 | 33008 | ||
| 20218 | Rhodococcus sp. BH2-N1 partial 16S rRNA gene | AJ619784 | 1431 | 259061 | ||
| 20218 | R.globerulus (NCIMB 12315)16S rRNA gene | X77779 | 1324 | 33008 | ||
| 20218 | R.globerulus 16S rRNA gene (NCIMB 12315T) | X81931 | 1315 | 33008 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 79.00 | no |
| 125439 | motility | BacteriaNetⓘ | no | 62.20 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 90.30 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 88.33 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.68 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 65.63 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 87.31 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 96.00 | no |
| 125438 | flagellated | motile2+ⓘ | no | 91.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Complete genome sequence of Rhodococcus globerulus AX7B, an abscisic acid-metabolizing strain. | Belimov AA, Guro PV, Sekste EA, Sazanova AL, Azarova TS, Shaposhnikov AI, Yuzikhin OS, Shahnazarova VY, Vishnevskaya NA, Lebedinsky MI, Safronova VI. | Microbiol Resour Announc | 10.1128/mra.00685-25 | 2025 | ||
| Characterization of trehalolipid biosurfactant produced by the novel marine strain Rhodococcus sp. SP1d and its potential for environmental applications. | Andreolli M, Villanova V, Zanzoni S, D'Onofrio M, Vallini G, Secchi N, Lampis S. | Microb Cell Fact | 10.1186/s12934-023-02128-9 | 2023 | ||
| Metabolism | Conservation of plasmid-encoded dibenzothiophene desulfurization genes in several rhodococci. | Denis-Larose C, Labbe D, Bergeron H, Jones AM, Greer CW, al-Hawari J, Grossman MJ, Sankey BM, Lau PC. | Appl Environ Microbiol | 10.1128/aem.63.7.2915-2919.1997 | 1997 | |
| Pathogenicity | Relationships between colony morphotypes and oil tolerance in Rhodococcus rhodochrous. | Iwabuchi N, Sunairi M, Anzai H, Nakajima M, Harayama S. | Appl Environ Microbiol | 10.1128/aem.66.11.5073-5077.2000 | 2000 | |
| Phylogeny | Whole genome sequencing reveals the genomic diversity, taxonomic classification, and evolutionary relationships of the genus Nocardia. | Xu S, Li Z, Huang Y, Han L, Che Y, Hou X, Li D, Fan S, Li Z. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0009665 | 2021 | |
| Characterization and Biological Activities of Four Biotransformation Products of Diosgenin from Rhodococcus erythropolis. | Li Y, Zhang C, Kong K, Yan X. | Molecules | 10.3390/molecules28073093 | 2023 | ||
| Phylogeny | Nocardiopsis codii sp. nov., and Rhodococcus chondri sp. nov., two novel actinomycetal species isolated from macroalgae collected in the northern Portuguese coast. | Girao M, Lequint Z, Rego A, Costa I, Proenca DN, Morais PV, Carvalho MF. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006483 | 2024 | |
| Phylogeny | Rhodococcus jialingiae sp. nov., an actinobacterium isolated from sludge of a carbendazim wastewater treatment facility. | Wang Z, Xu J, Li Y, Wang K, Wang Y, Hong Q, Li WJ, Li SP | Int J Syst Evol Microbiol | 10.1099/ijs.0.013219-0 | 2009 | |
| Phylogeny | Rhodococcus qingshengii sp. nov., a carbendazim-degrading bacterium. | Xu JL, He J, Wang ZC, Wang K, Li WJ, Tang SK, Li SP | Int J Syst Evol Microbiol | 10.1099/ijs.0.65095-0 | 2007 |
| #11425 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43954 |
| #19622 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #35631 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119643 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104174 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive10991.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data