Name: Gordonia jacobaea MV-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10609

Type strain:

Species: Gordonia jacobaea

Strain Designation: MV-1

Culture col. no.: DSM 44880, IFM 10484, JCM 12643, CECT 5282

Strain history: IFM 10484 <-- T. de Miguel et al. MV-1.

NCBI tax ID(s): 122202 (species)

Section

Gordonia jacobaea MV-1 is a mesophilic bacterium that was isolated from Air.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Gordoniaceae*
	Genus	*Gordonia*
	Species	"Gordonia jacobaea"
	Full Scientific Name (LPSN)	Gordonia jacobaea De Miguel et al. 2000

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12165]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12165]

Culture medium growth

[Ref.: #12165]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12165]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12165]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #12165]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite production	Metabolite	Production
[Ref.: #67770]		canthaxanthin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Air
[Ref.: #67770]	Geographic location (country and/or sea, region)	Santiago de Compostela
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AF251791 (>99% sequence identity) for Gordonia from Microbeatlas

Aquatic Samples	1283
Soil Samples	169
Animal Samples	3862
Plant Samples	78
Total Samples	5392

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gordonia jacobaea 16S ribosomal RNA gene, partial sequence	AF251791	1488	ENA	122202 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gordonia jacobaea mv1	GCA_001186365	contig	GenBank	122202 tax ID

[Ref.: #67770]

GC-content

61 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gordonia jacobaea mv1 NCBI: GCA_001186365.1
[Ref.: #69480]	motile	no	94.306	no
[Ref.: #69480]	flagellated	no	98.112	no
[Ref.: #69480]	gram-positive	yes	92.043	no
[Ref.: #69480]	anaerobic	no	99.234	no
[Ref.: #69480]	aerobic	yes	88.65	no
[Ref.: #69480]	halophile	no	82.183	no
[Ref.: #69480]	spore-forming	no	78.726	no
[Ref.: #69480]	glucose-util	yes	89.841	no
[Ref.: #69480]	thermophile	no	99.2	no
[Ref.: #69480]	glucose-ferment	no	88.105	no

Availability in culture collections External links

[Ref.: #12165]

Culture collection no.

DSM 44880, IFM 10484, JCM 12643, CECT 5282

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and taxonomic study of a new canthaxanthin-containing bacterium, Gordonia jacobaea MV-1 sp. nov.	de Miguel T, Sieiro C, Poza M, Villa TG	Int Microbiol		2000	*

References

#12165

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44880

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Gordonia jacobaea mv1

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