Strain identifier
BacDive ID: 87
Type strain: 
Species: Komagataeibacter xylinus
Strain Designation: B 4168
Strain history: IAM 14356 <-- NCIB 7029 <-- NCTC 7029 ("Acetobacter xylinum var. africanum") <-- T. K. Walker <-- R. M. Nattrass.
NCBI tax ID(s): 28448 (species)
version 8.1 (current version)
General
@ref: 952
BacDive-ID: 87
DSM-Number: 2004
keywords: 16S sequence, Bacteria, mesophilic, polysaccharide production
description: Komagataeibacter xylinus B 4168 is a mesophilic bacterium that produces polysaccharides and was isolated from Mixed culture NCTC 6716 from a vinegar brew.
NCBI tax id
- NCBI tax id: 28448
- Matching level: species
strain history
| @ref | history |
|---|---|
| 952 | <- LBG, B 4168 <- NCIB <- NCTC |
| 67770 | IAM 14356 <-- NCIB 7029 <-- NCTC 7029 ("Acetobacter xylinum var. africanum") <-- T. K. Walker <-- R. M. Nattrass. |
doi: 10.13145/bacdive87.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Komagataeibacter
- species: Komagataeibacter xylinus
- full scientific name: Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013
synonyms
@ref synonym 20215 Komagatabacter xylinus 20215 Bacterium xylinum 20215 Acetobacter xylinus 20215 Gluconoacetobacter xylinus 20215 Acetobacter aceti subsp. xylinus 20215 Acetobacter xylinum 20215 Acetobacter aceti subsp. xylinum 20215 Gluconacetobacter xylinus
@ref: 952
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Komagataeibacter
species: Komagataeibacter xylinus
full scientific name: Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013
strain designation: B 4168
type strain: no
Culture and growth conditions
culture medium
- @ref: 952
- name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)
- growth: yes
- link: https://mediadive.dsmz.de/medium/105
- composition: Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 952 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
compound production
- @ref: 952
- compound: cellulose
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Mixed culture NCTC 6716 from a vinegar brew
taxonmaps
- @ref: 69479
- File name: preview.99_79.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_64;97_67;98_72;99_79&stattab=map
- Last taxonomy: Komagataeibacter
- 16S sequence: GQ240638
- Sequence Identity:
- Total samples: 4067
- soil counts: 662
- aquatic counts: 523
- animal counts: 2327
- plant counts: 555
Safety information
risk assessment
- @ref: 952
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Gluconacetobacter xylinus strain DSM 2004 16S ribosomal RNA gene, partial sequence
- accession: GQ240638
- length: 1305
- database: ena
- NCBI tax ID: 28448
GC content
- @ref: 952
- GC-content: 58.9
External links
@ref: 952
culture collection no.: DSM 2004, ATCC 23768, NCIB 7029, JCM 21169, IAM 14356, NCIMB 7029, NCTC 7029
straininfo link
- @ref: 69770
- straininfo: 279676
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 2549367 | Cloning of a gene involved in cellulose biosynthesis in Acetobacter xylinum: complementation of cellulose-negative mutants by the UDPG pyrophosphorylase structural gene. | Valla S, Coucheron DH, Fjaervik E, Kjosbakken J, Weinhouse H, Ross P, Amikam D, Benziman M | Mol Gen Genet | 10.1007/BF00330938 | 1989 | Cellulose/biosynthesis/genetics, *Cloning, Molecular, Conjugation, Genetic, DNA, Bacterial/genetics, Electrophoresis, Agar Gel, Escherichia coli Proteins, *Genes, Genetic Complementation Test, Gluconacetobacter xylinus/enzymology/*genetics, Lyases/metabolism, Mutation, Nucleotidyltransferases/*genetics, Phosphoglucomutase/metabolism, Phosphoric Diester Hydrolases/metabolism, *Phosphorus-Oxygen Lyases, Plasmids, UTP-Glucose-1-Phosphate Uridylyltransferase/*genetics | Metabolism |
| Enzymology | 10803949 | Cloning, sequencing, and expression of UDP-glucose pyrophosphorylase gene from Acetobacter xylinum BRC5. | Koo HM, Yim SW, Lee CS, Pyun YR, Kim YS | Biosci Biotechnol Biochem | 10.1271/bbb.64.523 | 2000 | Cloning, Molecular, Escherichia coli, Gene Expression, Genes, Bacterial, Gluconacetobacter xylinus/*enzymology/genetics, Mutagenesis, Sequence Analysis, Transformation, Bacterial, UTP-Glucose-1-Phosphate Uridylyltransferase/*genetics/isolation & purification | Transcriptome |
| Metabolism | 26344281 | Cellulose produced by Gluconacetobacter xylinus strains ATCC 53524 and ATCC 23768: Pellicle formation, post-synthesis aggregation and fiber density. | Lee CM, Gu J, Kafle K, Catchmark J, Kim SH | Carbohydr Polym | 10.1016/j.carbpol.2015.06.091 | 2015 | Cellulose/*biosynthesis/*chemistry, Gluconacetobacter xylinus/cytology/*metabolism, Mechanical Phenomena | |
| 35480983 | Bioconversion of Terephthalic Acid and Ethylene Glycol Into Bacterial Cellulose by Komagataeibacter xylinus DSM 2004 and DSM 46604. | Esmail A, Rebocho AT, Marques AC, Silvestre S, Goncalves A, Fortunato E, Torres CAV, Reis MAM, Freitas F | Front Bioeng Biotechnol | 10.3389/fbioe.2022.853322 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 952 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2004) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2004 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69770 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID279676.1 | StrainInfo: A central database for resolving microbial strain identifiers |