Strain identifier

BacDive ID: 8607

Type strain: Yes

Species: Metamycoplasma hominis

Strain Designation: PG21

Strain history: 2010, NCTC

NCBI tax ID(s): 2098 (species)

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General

@ref: 18057

BacDive-ID: 8607

DSM-Number: 25592

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen

description: Metamycoplasma hominis PG21 is a mesophilic human pathogen that was isolated from human rectal swab.

NCBI tax id

  • NCBI tax id: 2098
  • Matching level: species

strain history

@refhistory
18057<- NBRC; IFO (now NBRC) 14850 <- CIP; CIP 103715 <- C. Bebear; PG21 <- J. G. Tully;
407722010, NCTC

doi: 10.13145/bacdive8607.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Mycoplasmoidales
  • family: Metamycoplasmataceae
  • genus: Metamycoplasma
  • species: Metamycoplasma hominis
  • full scientific name: Metamycoplasma hominis (Freundt 1953) Gupta et al. 2018

  • synonyms

    @refsynonym
    20215Micromyces hominis
    20215Mycoplasma hominis

@ref: 18057

domain: Bacteria

phylum: Tenericutes

class: Mollicutes

order: Mycoplasmatales

family: Metamycoplasmataceae

genus: Metamycoplasma

species: Metamycoplasma hominis

full scientific name: Metamycoplasma hominis (Freundt 1953) Gupta et al. 2018

strain designation: PG21

type strain: yes

Morphology

colony morphology

  • @ref: 18057
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18057SP4-Z MEDIUM (DSMZ Medium 1076b)yeshttps://mediadive.dsmz.de/medium/1076bName: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
40772MEDIUM 89 - for MycoplasmayesDistilled water make up to (670.000 ml);PPLO broth (17.000 g);Yeast extract solution 25 % - M00263 (100.000 ml);0.1 % Phenol red - M00387 (20.000 ml);Sterile supplement - M00276 (210.000 ml)

culture temp

@refgrowthtypetemperaturerange
18057positivegrowth37mesophilic
40772positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample typesampling date
18057human rectal swab
58918Human rectal swab1957

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Swab
#Host#Human
#Host Body-Site#Gastrointestinal tract#Rectum

Safety information

risk assessment

  • @ref: 18057
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycoplasma hominis gene for 16S rRNA, partial sequenceAB069814245ena2098
20218Mycoplasma hominis ATCC 23114 strain PG21 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceJN9358711523ena347256

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Metamycoplasma hominis ATCC 23114GCA_000085865completencbi347256
66792Mycoplasma hominis ATCC 275451267000.3wgspatric1267000
66792Mycoplasma hominis PG21, ATCC 23114646311946completeimg347256

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.431no
flagellatedno97.331no
gram-positiveyes51.645no
anaerobicno93.272no
aerobicno95.306no
halophileno50.538no
spore-formingno98.008no
thermophileno98.346yes
glucose-utilyes84.474no
glucose-fermentyes74.889no

External links

@ref: 18057

culture collection no.: DSM 25592, ATCC 23114, CIP 103715, IFO (now NBRC) 14850, NCTC 10111, CCUG 50616

straininfo link

  • @ref: 77990
  • straininfo: 45696

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18057Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25592)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25592
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40772Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15543
58918Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50616)https://www.ccug.se/strain?id=50616
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77990Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45696.1StrainInfo: A central database for resolving microbial strain identifiers