Strain identifier

BacDive ID: 8473

Type strain: Yes

Species: Mycobacterium celatum

Strain history: CIP <- 1999, W.R. Butler, CDC, Atlanta, GA, USA: strain CDC 90-0899

NCBI tax ID(s): 28045 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 11618

BacDive-ID: 8473

DSM-Number: 44243

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen

description: Mycobacterium celatum DSM 44243 is a mesophilic human pathogen that was isolated from sputum of a 74 years old woman.

NCBI tax id

  • NCBI tax id: 28045
  • Matching level: species

strain history

@refhistory
11618<- A. F. Yassin <- ATCC <- W. R. Butler, CDC, 90-0899 <- W. Gross
67770CCUG 39185 <-- DSM 44243 <-- A. F. Yassin <-- ATCC 51131 <-- W. R. Butler CDC 90-0899 <-- W. Gross.
117230CIP <- 1999, W.R. Butler, CDC, Atlanta, GA, USA: strain CDC 90-0899

doi: 10.13145/bacdive8473.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium celatum
  • full scientific name: Mycobacterium celatum Butler et al. 1993

@ref: 11618

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium celatum

full scientific name: Mycobacterium celatum Butler et al. 1993 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.172
69480100positive
117230norod-shaped

multimedia

  • @ref: 11618
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44243.jpg
  • caption: Medium 219 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11618MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
11618MYCOBACTERIUM MEDIUM (DSMZ Medium 219)yeshttps://mediadive.dsmz.de/medium/219Name: MYCOBACTERIUM MEDIUM (DSMZ Medium 219) Composition: Agar 20.0 g/l Na2HPO4 x 12 H2O 2.5 g/l Yeast extract 2.0 g/l Proteose peptone no. 3 2.0 g/l Casein peptone 2.0 g/l Sodium citrate 1.5 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.6 g/l Tween 0.5 g/l Glycerol Distilled water
36243MEDIUM 55 - for Mycobacteriumyes
117230CIP Medium 55yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55

culture temp

@refgrowthtypetemperaturerange
11618positivegrowth37mesophilic
36243positivegrowth37mesophilic
54692positivegrowth37mesophilic
67770positivegrowth37mesophilic
117230positivegrowth22-37
117230nogrowth10psychrophilic
117230nogrowth45thermophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.746

compound production

@refcompound
11618keto mycolic acids
11618dicarboxylic mycolic acids
11618alpha-mycolic acids

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
117230606565hippurate-hydrolysis
11723017632nitrate-reduction
11723016301nitrite-reduction

metabolite production

  • @ref: 117230
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
117230oxidase-
117230beta-galactosidase-3.2.1.23
117230gelatinase-
117230catalase+1.11.1.6
117230gamma-glutamyltransferase-2.3.2.2
117230urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117230-+++-+----++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11618sputum of a 74 years old womanIllinoisUSAUSANorth America
54692Human sputum,74-year-old womanIllinoisUSAUSANorth America
67770Sputum of humanILUSAUSANorth America
117230SputumIllinoisUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
11618yesyes2Risk group (German classification)
1172301Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium celatum 16S ribosomal RNA geneL081691460ena28045
20218Mycobacterium celatum strain CIP 106109 16S ribosomal RNA gene, partial sequenceAF547908556ena28045
20218Mycobacterium celatum 16S rRNA geneAJ5360401426ena28045

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium celatum strain ATCC 5113128045.4wgspatric28045
66792Mycobacterium celatum strain DSM 4424328045.5wgspatric28045
66792Mycobacterium celatum ATCC 511312645727597draftimg28045
67770Mycobacterium celatum ATCC 51131GCA_000974705contigncbi28045
67770Mycobacterium celatum DSM 44243GCA_002101595contigncbi28045

GC content

  • @ref: 67770
  • GC-content: 67
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno73no
motileno96.263no
gram-positiveyes89.56no
anaerobicno98.869no
halophileno93.745no
spore-formingno86.747no
glucose-utilyes62.445no
flagellatedno99.207no
aerobicyes88.879no
thermophileno93.5yes
glucose-fermentno91.207no

External links

@ref: 11618

culture collection no.: DSM 44243, ATCC 51131, CCUG 39185, JCM 12373, CDC 90-0899, CIP 106109

straininfo link

  • @ref: 77868
  • straininfo: 42819

literature

  • topic: Phylogeny
  • Pubmed-ID: 8102246
  • title: Mycobacterium celatum sp. nov.
  • authors: Butler WR, O'Connor SP, Yakrus MA, Smithwick RW, Plikaytis BB, Moss CW, Floyd MM, Woodley CL, Kilburn JO, Vadney FS, et al.
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-43-3-539
  • year: 1993
  • mesh: Bacterial Typing Techniques, Base Sequence, DNA, Ribosomal/genetics, Fatty Acids/analysis, Genes, Bacterial, Heat-Shock Proteins/genetics, Humans, Molecular Sequence Data, Mycobacterium/*classification/isolation & purification, Mycobacterium Infections/epidemiology/*microbiology, Mycolic Acids/analysis, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, United States/epidemiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11618Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44243)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44243
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36243Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18204
54692Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 39185)https://www.ccug.se/strain?id=39185
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77868Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42819.1StrainInfo: A central database for resolving microbial strain identifiers
117230Curators of the CIPCollection of Institut Pasteur (CIP 106109)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106109