Strain identifier
BacDive ID: 8418
Type strain: 
Species: Mycobacterium avium subsp. avium
Strain Designation: HaIV
Strain history: <- I. Tarnok, SN 304 <- Wagener, Inst. d. Tierärztl. Hochschule Hannover, HaIV
NCBI tax ID(s): 44454 (subspecies)
General
@ref: 10873
BacDive-ID: 8418
DSM-Number: 43216
keywords: 16S sequence, Bacteria, human pathogen
description: Mycobacterium avium subsp. avium HaIV is a human pathogen that was isolated from hen.
NCBI tax id
- NCBI tax id: 44454
- Matching level: subspecies
strain history
- @ref: 10873
- history: <- I. Tarnok, SN 304 <- Wagener, Inst. d. Tierärztl. Hochschule Hannover, HaIV
doi: 10.13145/bacdive8418.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium avium subsp. avium
- full scientific name: Mycobacterium avium subsp. avium (Chester 1901) Thorel et al. 1990
@ref: 10873
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium avium subsp. avium
full scientific name: Mycobacterium avium subsp. avium (Chester 1901) Thorel et al. 1990
strain designation: HaIV
type strain: no
Morphology
multimedia
- @ref: 10873
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43216.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 10873
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
- @ref: 10873
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 10873
- sample type: hen
isolation source categories
- Cat1: #Host
- Cat2: #Birds
- Cat3: #Chicken
taxonmaps
- @ref: 69479
- File name: preview.99_402.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_37;97_39;98_43;99_402&stattab=map
- Last taxonomy: Mycobacterium
- 16S sequence: X52918
- Sequence Identity:
- Total samples: 24078
- soil counts: 12779
- aquatic counts: 4789
- animal counts: 3677
- plant counts: 2833
Safety information
risk assessment
- @ref: 10873
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | M.avium 16S ribosomal RNA gene | M59264 | 144 | nuccore | 1764 |
| 20218 | Mycobacterium avium 16S rRNA gene | X52918 | 1465 | nuccore | 1764 |
External links
@ref: 10873
culture collection no.: DSM 43216, SN 304
straininfo link
- @ref: 77817
- straininfo: 50203
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10873 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43216) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43216 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 77817 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50203.1 | StrainInfo: A central database for resolving microbial strain identifiers |