Strain identifier
BacDive ID: 8382
Type strain: 
Species: Mycobacterium kansasii
Strain history: <- I. Tarnok, SN 502 <- Sula, Westfal 1106 (Mycobacterium sp.), TBC Forschungsinstitut Prag
NCBI tax ID(s): 1768 (species)
version 9.1 (current version)
General
@ref: 10881
BacDive-ID: 8382
DSM-Number: 43224
keywords: genome sequence, 16S sequence, Bacteria, human pathogen
description: Mycobacterium kansasii DSM 43224 is a human pathogen of the family Mycobacteriaceae.
NCBI tax id
- NCBI tax id: 1768
- Matching level: species
strain history
- @ref: 10881
- history: <- I. Tarnok, SN 502 <- Sula, Westfal 1106 (Mycobacterium sp.), TBC Forschungsinstitut Prag
doi: 10.13145/bacdive8382.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium kansasii
- full scientific name: Mycobacterium kansasii Hauduroy 1955 (Approved Lists 1980)
@ref: 10881
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium kansasii
full scientific name: Mycobacterium kansasii Hauduroy 1955 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10881 | LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) | yes | https://mediadive.dsmz.de/medium/354 | Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water |
| 10881 | PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251) | yes | https://mediadive.dsmz.de/medium/251 | Name: PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251) Composition: Glycerol 20.0 g/l Agar 20.0 g/l Proteose peptone no. 3 5.0 g/l Meat extract 3.0 g/l Soil extract Distilled water |
culture temp
- @ref: 10881
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
compound production
- @ref: 10881
- compound: acylamidases
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_75.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_37;97_39;98_43;99_75&stattab=map
- Last taxonomy: Mycobacterium
- 16S sequence: X15916
- Sequence Identity:
- Total samples: 1520
- soil counts: 881
- aquatic counts: 382
- animal counts: 203
- plant counts: 54
Safety information
risk assessment
- @ref: 10881
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | M.kansasii 16S ribosomal RNA gene | M59267 | 145 | nuccore | 1768 |
| 20218 | Mycobacterium kansaii DNA for 16S ribosomal RNA | X15916 | 1463 | nuccore | 1768 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacterium kansasii strain FDAARGOS_1534 | 1768.208 | complete | patric | 1768 |
| 66792 | Mycobacterium kansasii strain FDAARGOS_1534 | 1768.206 | complete | patric | 1768 |
| 66792 | Mycobacterium kansasii strain FDAARGOS_1534 | 1768.207 | complete | patric | 1768 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 87.342 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.994 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 61.113 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 75.859 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 87.5 | no |
External links
@ref: 10881
culture collection no.: DSM 43224, SN 502
straininfo link
- @ref: 77781
- straininfo: 50209
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10881 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43224) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43224 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 77781 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50209.1 | StrainInfo: A central database for resolving microbial strain identifiers |