Strain identifier
BacDive ID: 8344
Type strain: 
Species: Mycobacterium paraterrae
Strain Designation: 05-2522
Strain history: <- BJ Kim, Seoul Natl. Univ.
NCBI tax ID(s): 577492 (species)
version 8.1 (current version)
General
@ref: 12374
BacDive-ID: 8344
DSM-Number: 45127
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, human pathogen
description: Mycobacterium paraterrae 05-2522 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from sputum from a Korean patient with symptomatic pulmonary infection.
NCBI tax id
- NCBI tax id: 577492
- Matching level: species
strain history
| @ref | history |
|---|---|
| 12374 | <- B.-J. Kim; 05-2522 <- SNUCM |
| 67770 | KCTC 19556 <-- B.-J. Kim; Seoul Natl. Univ. Coll. of Med., South Korea; 05-2522. |
| 67771 | <- BJ Kim, Seoul Natl. Univ. |
doi: 10.13145/bacdive8344.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium paraterrae
- full scientific name: Mycobacterium paraterrae Lee et al. 2016
synonyms
- @ref: 20215
- synonym: Mycolicibacter paraterrae
@ref: 12374
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium paraterrae
full scientific name: Mycobacterium paraterrae Lee et al. 2016
strain designation: 05-2522
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
multimedia
- @ref: 12374
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45127.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 12374
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 12374 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 12374 | sputum from a Korean patient with symptomatic pulmonary infection | Republic of Korea | KOR | Asia | |
| 67770 | Human sputum of a patient with symptomatic pulmonary infection | Republic of Korea | KOR | Asia | Seoul |
| 67771 | From sputum of patients | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Disease | |
| #Infection | #Patient | |
| #Host Body Product | #Fluids | #Sputum |
Safety information
risk assessment
- @ref: 12374
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 12374 | Mycolicibacter paraterrae strain 05-2522 16S ribosomal RNA gene, partial sequence | EU919229 | 1332 | ena | 577492 |
| 12374 | Mycolicibacter paraterrae strain 05-2522 16S ribosomal RNA gene, partial sequence | EU919229.2 | 1332 | ena | 577492 |
| 67770 | Mycobacterium paraterrae strain DSM 45127 16S ribosomal RNA gene, partial sequence | KT861785 | 1513 | ena | 577492 |
Genome sequences
- @ref: 66792
- description: Mycobacterium paraterrae DSM 45127
- accession: GCA_022430545
- assembly level: complete
- database: ncbi
- NCBI tax ID: 577492
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 98.366 | no |
| flagellated | no | 98.366 | no |
| gram-positive | yes | 90.818 | yes |
| gram-positive | yes | 90.818 | yes |
| anaerobic | no | 99.54 | no |
| anaerobic | no | 99.54 | no |
| aerobic | yes | 92.65 | no |
| aerobic | yes | 92.65 | no |
| halophile | no | 95.233 | no |
| halophile | no | 95.233 | no |
| spore-forming | no | 85.9 | no |
| spore-forming | no | 85.9 | no |
| motile | no | 93.822 | no |
| motile | no | 93.822 | no |
| glucose-ferment | no | 92.594 | no |
| glucose-ferment | no | 92.594 | no |
| thermophile | no | 98.898 | yes |
| thermophile | no | 98.898 | yes |
| glucose-util | yes | 64.589 | no |
| glucose-util | yes | 64.589 | no |
External links
@ref: 12374
culture collection no.: DSM 45127, KCTC 19556, JCM 32754
straininfo link
- @ref: 77746
- straininfo: 408235
literature
- topic: Phylogeny
- Pubmed-ID: 20055942
- title: Mycobacterium paraterrae sp. nov. recovered from a clinical specimen: novel chromogenic slow growing mycobacteria related to Mycobacterium terrae complex.
- authors: Lee H, Lee SA, Lee IK, Yu HK, Park YG, Jeong J, Lee SH, Kim SR, Hyun JW, Kim K, Kook YH, Kim BJ
- journal: Microbiol Immunol
- DOI: 10.1111/j.1348-0421.2009.00184.x
- year: 2010
- mesh: Bacterial Proteins/genetics, Chaperonin 60/genetics, Humans, Mycobacterium/classification/genetics/*growth & development/*isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12374 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45127) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45127 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 77746 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID408235.1 | StrainInfo: A central database for resolving microbial strain identifiers |