Strain identifier
BacDive ID: 8281
Type strain: 
Species: Mycobacterium phlei
Strain Designation: X39
Strain history: <- R.E. Gordon, IMRU <- L.S. McClung, X39
NCBI tax ID(s): 1384515 (strain), 1771 (species)
version 8.1 (current version)
General
@ref: 10734
BacDive-ID: 8281
DSM-Number: 43071
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Mycobacterium phlei X39 is a mesophilic, Gram-positive bacterium of the family Mycobacteriaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1384515 | strain |
| 1771 | species |
strain history
- @ref: 10734
- history: <- R.E. Gordon, IMRU <- L.S. McClung, X39
doi: 10.13145/bacdive8281.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium phlei
- full scientific name: Mycobacterium phlei Lehmann and Neumann 1899 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Mycolicibacterium phlei
@ref: 10734
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium phlei
full scientific name: Mycobacterium phlei Lehmann and Neumann 1899 emend. Nouioui et al. 2018
strain designation: X39
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10734 | LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) | yes | https://mediadive.dsmz.de/medium/354 | Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water |
| 10734 | GYM+S MEDIUM (DSMZ Medium 214) | yes | https://mediadive.dsmz.de/medium/214 | Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 10734
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 91 |
| 69480 | no | 98.809 |
Safety information
risk assessment
- @ref: 10734
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacterium phlei DSM 43071 | GCA_001582025 | contig | ncbi | 1384515 |
| 66792 | Mycobacterium phlei DSM 43071 | 1384515.3 | wgs | patric | 1384515 |
| 66792 | Mycolicibacterium phlei DSM 43071 | 2724679509 | draft | img | 1384515 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 91 | no |
| motile | no | 92.829 | no |
| gram-positive | yes | 91.32 | no |
| anaerobic | no | 99.496 | no |
| halophile | no | 89.42 | no |
| spore-forming | no | 78.51 | no |
| glucose-util | yes | 87.001 | no |
| thermophile | no | 99.071 | no |
| aerobic | yes | 84.998 | no |
| flagellated | no | 98.231 | no |
| glucose-ferment | no | 90.52 | no |
External links
@ref: 10734
culture collection no.: DSM 43071, IMRU 811
straininfo link
- @ref: 77683
- straininfo: 50137
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 10734 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43071) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43071 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 77683 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50137.1 | StrainInfo: A central database for resolving microbial strain identifiers |