General

@ref: 6370

BacDive-ID: 8195

DSM-Number: 16328

keywords: 16S sequence, Bacteria, mesophilic

description: Psychrobacter cibarius JG-220 is a mesophilic bacterium that was isolated from jeotgal, a traditional Korean fermented seafood.

NCBI tax id

• NCBI tax id: 282669
• Matching level: species

strain history

• @ref: 6370
• history: <- J.-H. Yoon; JG-220

doi: 10.13145/bacdive8195.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Pseudomonadales
• family: Moraxellaceae
• genus: Psychrobacter
• species: Psychrobacter cibarius
• full scientific name: Psychrobacter cibarius Jung et al. 2005

@ref: 6370

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter cibarius

full scientific name: Psychrobacter cibarius Jung et al. 2005

strain designation: JG-220

type strain: no

Culture and growth conditions

culture medium

• @ref: 6370
• name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
• growth: yes
• link: https://mediadive.dsmz.de/medium/514
• composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

• @ref: 6370
• growth: positive
• type: growth
• temperature: 30
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 6370
• sample type: jeotgal, a traditional Korean fermented seafood
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_279.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_279&stattab=map
• Last taxonomy: Psychrobacter
• 16S sequence: AY639872
• Sequence Identity:
• Total samples: 7634
• soil counts: 925
• aquatic counts: 3187
• animal counts: 3350
• plant counts: 172

Safety information

risk assessment

• @ref: 6370
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 6370
• description: Psychrobacter cibarius strain JG-220 16S ribosomal RNA gene, partial sequence
• accession: AY639872
• length: 1494
• database: ena
• NCBI tax ID: 282669

GC content

• @ref: 6370
• GC-content: 43.0

External links

@ref: 6370

culture collection no.: DSM 16328

straininfo link

• @ref: 77598
• straininfo: 215481

literature

• topic: Phylogeny
• Pubmed-ID: 15774627
• title: Psychrobacter cibarius sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.
• authors: Jung SY, Lee MH, Oh TK, Park YH, Yoon JH
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.63398-0
• year: 2005
• mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fermentation, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Psychrobacter/*classification/*genetics/growth & development/isolation & purification, RNA, Ribosomal, 16S/genetics, Seafood/*microbiology, Sequence Analysis, DNA
• topic2: Genetics

Reference