Strain identifier
BacDive ID: 8183
Type strain: 
Species: Psychrobacter sp.
Strain Designation: DD43
Strain history: <- S. Shivaji; DD43
NCBI tax ID(s): 56811 (species)
version 8.1 (current version)
General
@ref: 5849
BacDive-ID: 8183
DSM-Number: 15332
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic
description: Psychrobacter sp. DD43 is a psychrophilic bacterium that was isolated from fast ice.
NCBI tax id
- NCBI tax id: 56811
- Matching level: species
strain history
- @ref: 5849
- history: <- S. Shivaji; DD43
doi: 10.13145/bacdive8183.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter sp.
- full scientific name: Psychrobacter Juni and Heym 1986
@ref: 5849
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter sp.
full scientific name: Psychrobacter sp.
strain designation: DD43
type strain: no
Culture and growth conditions
culture medium
- @ref: 5849
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/381
- composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 5849
- growth: positive
- type: growth
- temperature: 22
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 5849
- sample type: fast ice
- geographic location: Adeile
- continent: Australia and Oceania
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Ice
taxonmaps
- @ref: 69479
- File name: preview.99_1368.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_1368&stattab=map
- Last taxonomy: Psychrobacter
- 16S sequence: AJ539102
- Sequence Identity:
- Total samples: 340
- soil counts: 12
- aquatic counts: 125
- animal counts: 202
- plant counts: 1
Sequence information
16S sequences
- @ref: 5849
- description: Psychrobacter glacialis partial 16S rRNA gene, strain DD43
- accession: AJ539102
- length: 1458
- database: ena
- NCBI tax ID: 219739
Genome sequences
- @ref: 66792
- description: Psychrobacter sp. DD43
- accession: 2774128.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 2774128
GC content
- @ref: 5849
- GC-content: 43
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 86.871 | no |
| gram-positive | no | 98.21 | no |
| anaerobic | no | 98.752 | no |
| halophile | yes | 77.837 | no |
| spore-forming | no | 96.812 | no |
| glucose-util | no | 57.117 | no |
| flagellated | no | 88.714 | no |
| aerobic | yes | 88.286 | no |
| thermophile | no | 99.362 | yes |
| glucose-ferment | no | 93.091 | no |
External links
@ref: 5849
culture collection no.: DSM 15332
straininfo link
- @ref: 77586
- straininfo: 400573
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5849 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15332) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15332 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 77586 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400573.1 | StrainInfo: A central database for resolving microbial strain identifiers |