Strain identifier

BacDive ID: 8171

Type strain: Yes

Species: Moraxella lincolnii

Strain history: CIP <- 1994, CCUG <- K. Lincoln, PHL, Göteborg, Sweden

NCBI tax ID(s): 90241 (species)

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General

@ref: 7938

BacDive-ID: 8171

DSM-Number: 19150

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, human pathogen

description: Moraxella lincolnii DSM 19150 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human nasopharynx, 6-month-old female with high fever.

NCBI tax id

  • NCBI tax id: 90241
  • Matching level: species

strain history

@refhistory
7938<- CIP <- CCUG <- K. Lincoln, PHL, Göteborg
120610CIP <- 1994, CCUG <- K. Lincoln, PHL, Göteborg, Sweden

doi: 10.13145/bacdive8171.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Moraxella
  • species: Moraxella lincolnii
  • full scientific name: Moraxella lincolnii Vandamme et al. 1993

@ref: 7938

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Moraxella

species: Moraxella lincolnii

full scientific name: Moraxella lincolnii Vandamme et al. 1993

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.999
120610negativeoval-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7938COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
39852MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120610CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
7938positivegrowth37mesophilic
39852positivegrowth30mesophilic
45187positivegrowth33-37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
45187aerobe
120610obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12061017632nitrate+reduction
12061016301nitrite-reduction
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
120610oxidase+
120610catalase+1.11.1.6
120610urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • @reffatty acidpercentageECL
    45187C10:09.110
    45187C12:04.712
    45187C16:010.516
    45187C18:04.718
    45187C12:0 3OH7.513.455
    45187C16:1 ω7c7.415.819
    45187C16:1 ω9c1.115.774
    45187C18:1 ω9c4317.769
    45187C18:2 ω6,9c/C18:0 ANTE1217.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    45187C10:07.410
    45187C12:02.512
    45187C16:06.816
    45187C18:04.518
    45187C12:0 3OH6.313.455
    45187C16:1 ω7c1115.819
    45187C16:1 ω9c1.515.774
    45187C18:1 ω9c53.217.769
    45187C18:2 ω6,9c/C18:0 ANTE6.817.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    45187C10:012.210
    45187C12:07.512
    45187C14:00.614
    45187C16:08.616
    45187C18:01.418
    45187C12:0 3OH8.413.455
    45187C16:1 ω7c22.915.819
    45187C16:1 ω9c1.715.774
    45187C18:1 ω9c33.917.769
    45187C18:2 ω6,9c/C18:0 ANTE2.217.724
    45187unknown 12.4860.812.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    45187C10:09.710
    45187C12:05.112
    45187C16:011.416
    45187C18:09.818
    45187C12:0 3OH7.713.455
    45187C16:1 ω7c8.115.819
    45187C18:1 ω9c41.817.769
    45187C18:2 ω6,9c/C18:0 ANTE6.517.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120610--++-+----++---+----

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
45187-------------
7938------+-----
7938-------+/----+/--
7938-------+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
7938human nasopharynx, 6-month-old female with high feverGöteborgSwedenSWEEurope
45187Human nasopharynx,6-month-old female,fever,UTIGöteborgSwedenSWEEurope1980-01-27
120610Human, NasopharynxGöteborgSwedenSWEEurope1980

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human#Female
#Host Body-Site#Oral cavity and airways#Airways
#Host#Human#Child

taxonmaps

  • @ref: 69479
  • File name: preview.99_5116.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_2489;97_3039;98_3817;99_5116&stattab=map
  • Last taxonomy: Moraxella lincolnii subclade
  • 16S sequence: HF558363
  • Sequence Identity:
  • Total samples: 17741
  • soil counts: 719
  • aquatic counts: 3393
  • animal counts: 13224
  • plant counts: 405

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
7938yes, in single cases1Risk group (German classification)
1206101Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Moraxella lincolnii 16S rRNA gene, strain CCUG 9405TAJ4174901276ena90241
20218Moraxella lincolnii partial 16S rRNA gene, type strain CCUG 9405TFR8227351501ena90241
20218Moraxella lincolnii partial 16S rRNA gene, strain LMG 5127HF5583631501ena90241
7938Moraxella lincolnii 16S rRNA gene, partialAJ247229445ena90241

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Moraxella lincolnii CCUG 9405GCA_002014765scaffoldncbi90241
66792Moraxella lincolnii strain CCUG 940590241.3wgspatric90241
66792Moraxella lincolnii CCUG 94052878536677draftimg90241

GC content

  • @ref: 7938
  • GC-content: 44

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno93.101no
gram-positiveno98.175no
anaerobicno99.222yes
aerobicno73.026yes
halophileno58.055no
spore-formingno96.486no
glucose-utilno71.16no
thermophileno97.51yes
motileno88.061no
glucose-fermentno91.435no

External links

@ref: 7938

culture collection no.: DSM 19150, ATCC 51388, CCUG 9405, CIP 103802, LMG 5127

straininfo link

  • @ref: 77574
  • straininfo: 3585

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7938Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19150)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19150
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39852Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15639
45187Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 9405)https://www.ccug.se/strain?id=9405
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77574Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3585.1StrainInfo: A central database for resolving microbial strain identifiers
120610Curators of the CIPCollection of Institut Pasteur (CIP 103802)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103802