Strain identifier

BacDive ID: 8134

Type strain: Yes

Species: Acinetobacter schindleri

Strain history: CIP <- 2001, A. Nemec, NIPH, Prague, Czech Republic: strain NIPH 1034 <- 1998, P. Jezek, Clin. Lab., Pribram, Czech Republic

NCBI tax ID(s): 1217988 (strain), 108981 (species)

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General

@ref: 6156

BacDive-ID: 8134

DSM-Number: 16038

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Acinetobacter schindleri DSM 16038 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from vagina.

NCBI tax id

NCBI tax idMatching level
108981species
1217988strain

strain history

@refhistory
6156<- LMG <- A. Nemec, Natl. Inst. Pub. Health, Prague <- P. Jezek
122505CIP <- 2001, A. Nemec, NIPH, Prague, Czech Republic: strain NIPH 1034 <- 1998, P. Jezek, Clin. Lab., Pribram, Czech Republic

doi: 10.13145/bacdive8134.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter schindleri
  • full scientific name: Acinetobacter schindleri Nemec et al. 2001

@ref: 6156

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter schindleri

full scientific name: Acinetobacter schindleri Nemec et al. 2001

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
122505negativerod-shapedno
125438negative99.5

colony morphology

  • @ref: 122505

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6156NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
6156COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
42126MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122505CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
6156positivegrowth28
42126positivegrowth30
56821positivegrowth30-42
122505positivegrowth10-41
122505nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
56821aerobe
122505obligate aerobe
125438aerobe91.475
125439aerobe97.5

spore formation

@refspore formationconfidence
125438no93.736
125439no93.5

halophily

@refsaltgrowthtested relationconcentration
122505NaClpositivegrowth0-4 %
122505NaClnogrowth6 %
122505NaClnogrowth8 %
122505NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12250516947citrate-carbon source
12250517632nitrate-reduction
12250516301nitrite-reduction
12250517234glucose-degradation
12250517632nitrate-respiration
6836925115malate+assimilation
6836927689decanoate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

antibiotic resistance

  • @ref: 122505
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
12250515688acetoin-
12250517234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
122505oxidase-
122505beta-galactosidase-3.2.1.23
122505gelatinase-
122505catalase+1.11.1.6
122505gamma-glutamyltransferase-2.3.2.2
122505urease-3.5.1.5
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122505--++++-+--++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6156--------+/-+/-+/-+/-+++/--+/-++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122505-------------------------------------------------++-++--------++-+++++-----+---+++--------++++--+-+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
6156vaginaCzech RepublicCZEEurope
56821Human urineCzech RepublicCZEEurope1998Príbram
122505Human, UrineCzech RepublicCZEEuropePribram1998

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Urogenital tract#Vagina
#Host#Mammals

taxonmaps

  • @ref: 69479
  • File name: preview.99_96.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_79;98_87;99_96&stattab=map
  • Last taxonomy: Acinetobacter schindleri subclade
  • 16S sequence: AJ278311
  • Sequence Identity:
  • Total samples: 388
  • soil counts: 22
  • aquatic counts: 203
  • animal counts: 144
  • plant counts: 19

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
61562Risk group (German classification)
1225051Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acinetobacter schindleri strain LMG 19576 16S-23S ribosomal RNA intergenic spacer, complete sequenceAY601848638nuccore1217988
20218Acinetobacter schindleri strain DSM16038 16S ribosomal RNA gene, partial sequenceEF611413452nuccore1217988
6156Acinetobacter sp. phenon 2 16S rRNA gene, strain type LUH5832AJ2783111466nuccore108981

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter schindleri CIP 107287GCA_000368625scaffoldncbi1217988
66792Acinetobacter schindleri CIP 1072871217988.3wgspatric1217988
66792Acinetobacter schindleri CIP 1072872565956681draftimg1217988

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno99.5no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.264no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes91.475yes
125438spore-formingspore-formingAbility to form endo- or exosporesno93.736no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98.5no
125438motile2+flagellatedAbility to perform flagellated movementno75.222no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno93.5
125439BacteriaNetmotilityAbility to perform movementno58.4
125439BacteriaNetgram_stainReaction to gram-stainingnegative87.9
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthaerobe97.5

External links

@ref: 6156

culture collection no.: DSM 16038, CNCTC 6736, LMG 19576, NIPH 1034, CCUG 45560, KCTC 12409, CIP 107287, LUH 5832

straininfo link

  • @ref: 77540
  • straininfo: 13274

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11594623Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens.Nemec A, De Baere T, Tjernberg I, Vaneechoutte M, van der Reijden TJ, Dijkshoorn LInt J Syst Evol Microbiol10.1099/00207713-51-5-18912001Acinetobacter/*classification/*genetics/growth & development/isolation & purification, Acinetobacter Infections/*microbiology, DNA, Ribosomal/analysis, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Restriction Mapping, Sequence Analysis, DNAPathogenicity
Phylogeny25225259Acinetobacter gandensis sp. nov. isolated from horse and cattle.Smet A, Cools P, Krizova L, Maixnerova M, Sedo O, Haesebrouck F, Kempf M, Nemec A, Vaneechoutte MInt J Syst Evol Microbiol10.1099/ijs.0.068791-02014Acinetobacter/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Belgium, Cattle/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Genes, Bacterial, Horses/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6156Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16038)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16038
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42126Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4706
56821Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 45560)https://www.ccug.se/strain?id=45560
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77540Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13274.1StrainInfo: A central database for resolving microbial strain identifiers
122505Curators of the CIPCollection of Institut Pasteur (CIP 107287)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107287
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1