Strain identifier
BacDive ID: 8134
Type strain:
Species: Acinetobacter schindleri
Strain history: CIP <- 2001, A. Nemec, NIPH, Prague, Czech Republic: strain NIPH 1034 <- 1998, P. Jezek, Clin. Lab., Pribram, Czech Republic
NCBI tax ID(s): 1217988 (strain), 108981 (species)
General
@ref: 6156
BacDive-ID: 8134
DSM-Number: 16038
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Acinetobacter schindleri DSM 16038 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from vagina.
NCBI tax id
NCBI tax id | Matching level |
---|---|
108981 | species |
1217988 | strain |
strain history
@ref | history |
---|---|
6156 | <- LMG <- A. Nemec, Natl. Inst. Pub. Health, Prague <- P. Jezek |
122505 | CIP <- 2001, A. Nemec, NIPH, Prague, Czech Republic: strain NIPH 1034 <- 1998, P. Jezek, Clin. Lab., Pribram, Czech Republic |
doi: 10.13145/bacdive8134.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter schindleri
- full scientific name: Acinetobacter schindleri Nemec et al. 2001
@ref: 6156
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter schindleri
full scientific name: Acinetobacter schindleri Nemec et al. 2001
type strain: yes
Morphology
cell morphology
- @ref: 122505
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 122505
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6156 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
6156 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
42126 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
122505 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6156 | positive | growth | 28 | mesophilic |
42126 | positive | growth | 30 | mesophilic |
56821 | positive | growth | 30-42 | |
122505 | positive | growth | 10-41 | |
122505 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
56821 | aerobe |
122505 | obligate aerobe |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
122505 | NaCl | positive | growth | 0-4 % |
122505 | NaCl | no | growth | 6 % |
122505 | NaCl | no | growth | 8 % |
122505 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
122505 | 16947 | citrate | - | carbon source |
122505 | 17632 | nitrate | - | reduction |
122505 | 16301 | nitrite | - | reduction |
122505 | 17234 | glucose | - | degradation |
122505 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 122505
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68369 | 35581 | indole | - | ||
122505 | 15688 | acetoin | - | ||
122505 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | - | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
122505 | oxidase | - | |
122505 | beta-galactosidase | - | 3.2.1.23 |
122505 | gelatinase | - | |
122505 | catalase | + | 1.11.1.6 |
122505 | gamma-glutamyltransferase | - | 2.3.2.2 |
122505 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122505 | - | - | + | + | + | + | - | + | - | - | + | + | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6156 | - | - | - | - | - | - | - | - | +/- | +/- | +/- | +/- | + | + | +/- | - | +/- | + | + | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122505 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | + | + | - | - | - | - | - | - | - | - | + | + | - | + | + | + | + | + | - | - | - | - | - | + | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | + | + | + | - | - | + | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date | geographic location | isolation date |
---|---|---|---|---|---|---|---|
6156 | vagina | Czech Republic | CZE | Europe | |||
56821 | Human urine | Czech Republic | CZE | Europe | 1998 | Príbram | |
122505 | Human, Urine | Czech Republic | CZE | Europe | Pribram | 1998 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body-Site | #Urogenital tract | #Vagina |
#Host | #Mammals |
taxonmaps
- @ref: 69479
- File name: preview.99_96.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_79;98_87;99_96&stattab=map
- Last taxonomy: Acinetobacter schindleri subclade
- 16S sequence: AJ278311
- Sequence Identity:
- Total samples: 388
- soil counts: 22
- aquatic counts: 203
- animal counts: 144
- plant counts: 19
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6156 | 2 | Risk group (German classification) |
122505 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acinetobacter schindleri strain LMG 19576 16S-23S ribosomal RNA intergenic spacer, complete sequence | AY601848 | 638 | ena | 1217988 |
20218 | Acinetobacter schindleri strain DSM16038 16S ribosomal RNA gene, partial sequence | EF611413 | 452 | ena | 1217988 |
6156 | Acinetobacter sp. phenon 2 16S rRNA gene, strain type LUH5832 | AJ278311 | 1466 | ena | 108981 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter schindleri CIP 107287 | GCA_000368625 | scaffold | ncbi | 1217988 |
66792 | Acinetobacter schindleri CIP 107287 | 1217988.3 | wgs | patric | 1217988 |
66792 | Acinetobacter schindleri CIP 107287 | 2565956681 | draft | img | 1217988 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 93.431 | no |
flagellated | no | 96.519 | no |
gram-positive | no | 98.006 | no |
anaerobic | no | 98.661 | yes |
aerobic | yes | 91.145 | yes |
halophile | no | 84.028 | no |
spore-forming | no | 96.992 | no |
thermophile | no | 99.73 | no |
glucose-util | no | 88.673 | no |
glucose-ferment | no | 93.008 | yes |
External links
@ref: 6156
culture collection no.: DSM 16038, CNCTC 6736, LMG 19576, NIPH 1034, CCUG 45560, KCTC 12409, CIP 107287, LUH 5832
straininfo link
- @ref: 77540
- straininfo: 13274
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 11594623 | Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens. | Nemec A, De Baere T, Tjernberg I, Vaneechoutte M, van der Reijden TJ, Dijkshoorn L | Int J Syst Evol Microbiol | 10.1099/00207713-51-5-1891 | 2001 | Acinetobacter/*classification/*genetics/growth & development/isolation & purification, Acinetobacter Infections/*microbiology, DNA, Ribosomal/analysis, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Restriction Mapping, Sequence Analysis, DNA | Pathogenicity |
Phylogeny | 25225259 | Acinetobacter gandensis sp. nov. isolated from horse and cattle. | Smet A, Cools P, Krizova L, Maixnerova M, Sedo O, Haesebrouck F, Kempf M, Nemec A, Vaneechoutte M | Int J Syst Evol Microbiol | 10.1099/ijs.0.068791-0 | 2014 | Acinetobacter/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Belgium, Cattle/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Genes, Bacterial, Horses/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6156 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16038) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16038 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
42126 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4706 | ||||
56821 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 45560) | https://www.ccug.se/strain?id=45560 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68369 | Automatically annotated from API 20NE | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
77540 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13274.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122505 | Curators of the CIP | Collection of Institut Pasteur (CIP 107287) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107287 |