Strain identifier
BacDive ID: 7967
Type strain: 
Species: Micromonospora aurantiaca
Strain history: <- J. Hamedi, Univ. Tehran, Iran <- F. Mohammadipanah; UTMC 555
NCBI tax ID(s): 47850 (species)
version 9.1 (current version)
General
@ref: 17343
BacDive-ID: 7967
DSM-Number: 45487
keywords: genome sequence, Bacteria, spore-forming
description: Micromonospora aurantiaca DSM 45487 is a spore-forming bacterium that was isolated from humic soil.
NCBI tax id
- NCBI tax id: 47850
- Matching level: species
strain history
- @ref: 17343
- history: <- J. Hamedi, Univ. Tehran, Iran <- F. Mohammadipanah; UTMC 555
doi: 10.13145/bacdive7967.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora aurantiaca
- full scientific name: Micromonospora aurantiaca Sveshnikova et al. 1969 (Approved Lists 1980)
@ref: 17343
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora aurantiaca
full scientific name: Micromonospora aurantiaca Sveshnikova et al. 1969
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 93.356 | |
| 69480 | 90.5 | no |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 17343 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 17343 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf |
culture temp
- @ref: 17343
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 92.336
Isolation, sampling and environmental information
isolation
- @ref: 17343
- sample type: humic soil
- geographic location: Kermanshah Province
- country: Iran
- origin.country: IRN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 17343
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Micromonospora aurantiaca DSM 45487 | GCA_900090255 | contig | ncbi | 47850 |
| 66792 | Micromonospora aurantiaca strain DSM 45487 | 47850.7 | wgs | patric | 47850 |
| 66792 | Micromonospora aurantiaca DSM 45487 | 2619619011 | draft | img | 47850 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.356 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.386 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.336 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 84.242 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90.5 | no |
External links
@ref: 17343
culture collection no.: DSM 45487, UTMC 555
straininfo link
- @ref: 77401
- straininfo: 406296
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17343 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45487) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45487 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 77401 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406296.1 | StrainInfo: A central database for resolving microbial strain identifiers |