Strain identifier

BacDive ID: 7967

Type strain: No

Species: Micromonospora aurantiaca

Strain history: <- J. Hamedi, Univ. Tehran, Iran <- F. Mohammadipanah; UTMC 555

NCBI tax ID(s): 47850 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17343

BacDive-ID: 7967

DSM-Number: 45487

keywords: genome sequence, Bacteria, spore-forming

description: Micromonospora aurantiaca DSM 45487 is a spore-forming bacterium that was isolated from humic soil.

NCBI tax id

  • NCBI tax id: 47850
  • Matching level: species

strain history

  • @ref: 17343
  • history: <- J. Hamedi, Univ. Tehran, Iran <- F. Mohammadipanah; UTMC 555

doi: 10.13145/bacdive7967.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora aurantiaca
  • full scientific name: Micromonospora aurantiaca Sveshnikova et al. 1969 (Approved Lists 1980)

@ref: 17343

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora aurantiaca

full scientific name: Micromonospora aurantiaca Sveshnikova et al. 1969

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.123
6948092.147positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17343GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17343TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf

culture temp

  • @ref: 17343
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 95.29

Isolation, sampling and environmental information

isolation

  • @ref: 17343
  • sample type: humic soil
  • geographic location: Kermanshah Province
  • country: Iran
  • origin.country: IRN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 17343
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Micromonospora aurantiaca DSM 45487GCA_900090255contigncbi47850
66792Micromonospora aurantiaca strain DSM 4548747850.7wgspatric47850
66792Micromonospora aurantiaca DSM 454872619619011draftimg47850

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes92.147no
anaerobicno99.424no
halophileno95.83no
spore-formingyes95.29no
glucose-utilyes92.218no
aerobicyes95.763no
flagellatedno98.06no
thermophileno98.661yes
motileno94.123no
glucose-fermentno91.605no

External links

@ref: 17343

culture collection no.: DSM 45487, UTMC 555

straininfo link

  • @ref: 77401
  • straininfo: 406296

Reference

@idauthorscataloguedoi/urltitle
17343Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45487)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45487
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77401Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406296.1StrainInfo: A central database for resolving microbial strain identifiers