Strain identifier
BacDive ID: 7845
Type strain: 
Species: Actinoplanes toevensis
Strain Designation: MN07-A0368
Strain history: <- NBRC <- I. Ara(NITE) and B. Tsetseg(Mongolian Acad. Sci.); MN07-A0368
NCBI tax ID(s): 571911 (species)
version 8.1 (current version)
General
@ref: 17665
BacDive-ID: 7845
DSM-Number: 45573
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Actinoplanes toevensis MN07-A0368 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 571911
- Matching level: species
strain history
- @ref: 17665
- history: <- NBRC <- I. Ara(NITE) and B. Tsetseg(Mongolian Acad. Sci.); MN07-A0368
doi: 10.13145/bacdive7845.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinoplanes
- species: Actinoplanes toevensis
- full scientific name: Actinoplanes toevensis Ara et al. 2010
@ref: 17665
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinoplanes
species: Actinoplanes toevensis
full scientific name: Actinoplanes toevensis Ara et al. 2010
strain designation: MN07-A0368
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 29270 | positive | |
| 69480 | positive | 100 |
pigmentation
- @ref: 29270
- production: yes
multimedia
- @ref: 17665
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45573.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 17665 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 17665 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17665 | positive | growth | 28 | mesophilic |
| 29270 | positive | growth | 25-30 | mesophilic |
| 29270 | positive | optimum | 27.5 | mesophilic |
culture pH
- @ref: 29270
- ability: positive
- type: growth
- pH: 06-11
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 29270
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29270 | yes | |
| 69481 | yes | 100 |
| 69480 | yes | 100 |
halophily
- @ref: 29270
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <2 %
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29270 | acid phosphatase | + | 3.1.3.2 |
| 29270 | alkaline phosphatase | + | 3.1.3.1 |
| 29270 | catalase | + | 1.11.1.6 |
| 29270 | gelatinase | + | |
| 29270 | pyrazinamidase | + | 3.5.1.B15 |
| 29270 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 17665
- sample type: soil
- geographic location: Terelj National Park, Töv Province
- country: Mongolia
- origin.country: MNG
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 17665
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17665
- description: Actinoplanes toevensis gene for 16S ribosomal RNA, partial sequence
- accession: AB468943
- length: 1458
- database: ena
- NCBI tax ID: 571911
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinoplanes toevensis NBRC 105298 | GCA_018332695 | contig | ncbi | 571911 |
| 66792 | Actinoplanes toevensis strain NBRC 105298 | 571911.3 | wgs | patric | 571911 |
GC content
- @ref: 17665
- GC-content: 70.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| gram-positive | yes | 87.348 | yes |
| anaerobic | no | 98.826 | yes |
| halophile | no | 96.943 | no |
| spore-forming | yes | 91.02 | yes |
| glucose-util | yes | 90.53 | no |
| thermophile | no | 99.194 | yes |
| flagellated | no | 91.373 | no |
| aerobic | yes | 92.38 | no |
| motile | yes | 61.172 | no |
| glucose-ferment | no | 89.425 | no |
External links
@ref: 17665
culture collection no.: DSM 45573, NBRC 105298, VTCC D9-11
straininfo link
- @ref: 77282
- straininfo: 400028
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19661505 | Actinoplanes toevensis sp. nov. and Actinoplanes tereljensis sp. nov., isolated from Mongolian soil. | Ara I, Yamamura H, Tsetseg B, Daram D, Ando K | Int J Syst Evol Microbiol | 10.1099/ijs.0.009944-0 | 2009 | Bacterial Typing Techniques, Carbohydrates/analysis, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Genotype, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Mongolia, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Vitamin K 2/analysis | Genetics |
| Phylogeny | 26432564 | Actinoplanes rhizophilus sp. nov., an actinomycete isolated from the rhizosphere of Sansevieria trifasciata Prain. | He H, Xing J, Liu C, Li C, Ma Z, Li J, Xiang W, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000646 | 2015 | Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Micromonosporaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sansevieria/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 17665 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45573) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45573 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29270 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25687 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77282 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400028.1 | StrainInfo: A central database for resolving microbial strain identifiers |