Strain identifier
BacDive ID: 7836
Type strain: 
Species: Actinoplanes garbadinensis
Strain Designation: A/10889, FH 2243
Strain history: KCC A-0248 <-- SANK 62078 <-- ATCC 31049 <-- Lepetit A/10889.
NCBI tax ID(s): 69485 (species)
version 8.1 (current version)
General
@ref: 11669
BacDive-ID: 7836
DSM-Number: 44321
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Actinoplanes garbadinensis A/10889 is a mesophilic bacterium that produces antibiotic compounds and was isolated from garden soil.
NCBI tax id
- NCBI tax id: 69485
- Matching level: species
strain history
| @ref | history |
|---|---|
| 11669 | <- J. Wink, Hoechst AG, FH 2243 <- ATCC <- Lepetit Labs., A/10889 |
| 67770 | KCC A-0248 <-- SANK 62078 <-- ATCC 31049 <-- Lepetit A/10889. |
doi: 10.13145/bacdive7836.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinoplanes
- species: Actinoplanes garbadinensis
- full scientific name: Actinoplanes garbadinensis Coronelli et al. 1976
@ref: 11669
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinoplanes
species: Actinoplanes garbadinensis
full scientific name: Actinoplanes garbadinensis Parenti et al.
strain designation: A/10889, FH 2243
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11669 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 11669 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 11669 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
- @ref: 11669
- compound: gardimycin
metabolite production
- @ref: 67770
- metabolite: gardimycin
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 11669 | garden soil | Garbady | India | IND | Asia |
| 67770 | Garden soil | Garbady | India | IND | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Engineered | #Agriculture | #Garden |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Actinoplanes garbadinensis 16S rRNA gene, strain DSM 44321 | AJ865473 | 1483 | ena | 69485 |
| 20218 | Actinoplanes garbadinensis gene for 16S rRNA, partial sequence | AB047493 | 1470 | ena | 69485 |
| 20218 | Actinoplanes garbadinensis partial 16S rRNA gene, strain IMSNU 20040 | AJ277575 | 1483 | ena | 69485 |
Genome sequences
- @ref: 66792
- description: Actinoplanes garbadinensis ATCC 31049
- accession: 651717086
- assembly level: draft
- database: img
- NCBI tax ID: 69485
External links
@ref: 11669
culture collection no.: DSM 44321, ATCC 31049, CBS 356.75, IFO 13995, JCM 3248, KCC A-0248, NBRC 13995, NCIMB 12637, NRRL B-16719, BCRC 12480, IMSNU 20040, KCTC 9533
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 19400806 | Organization of the genes encoding the biosynthesis of actagardine and engineering of a variant generation system. | Boakes S, Cortes J, Appleyard AN, Rudd BA, Dawson MJ | Mol Microbiol | 10.1111/j.1365-2958.2009.06708.x | 2009 | Amino Acid Sequence, Bacteriocins/*biosynthesis, Cloning, Molecular, Cosmids/genetics, DNA, Bacterial/genetics, Gene Expression Regulation, Bacterial, Gene Library, Genes, Bacterial, Micromonosporaceae/enzymology/*genetics, Molecular Sequence Data, *Multigene Family, Peptides/metabolism, Plasmids, Streptomyces lividans/genetics/metabolism | Genetics |
| Metabolism | 22526797 | Generation of an actagardine A variant library through saturation mutagenesis. | Boakes S, Ayala T, Herman M, Appleyard AN, Dawson MJ, Cortes J | Appl Microbiol Biotechnol | 10.1007/s00253-012-4041-0 | 2012 | Amino Acid Sequence, Anti-Bacterial Agents/metabolism/pharmacology, Bacteriocins/*genetics/metabolism/pharmacology, Gene Library, Genetic Variation, Gram-Positive Bacteria/drug effects, Microbial Sensitivity Tests, Micromonosporaceae/*genetics/metabolism, Molecular Sequence Data, Mutagenesis, Peptides/*genetics/metabolism/pharmacology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11669 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44321) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44321 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |