Strain identifier

BacDive ID: 7672

Type strain: No

Species: Micrococcus luteus

Strain Designation: Ballarat

Strain history: CIP <- 2002, DSMZ <- M. Wieser <- A.M. Maszenan: strain Ballarat

NCBI tax ID(s): 1270 (species)

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General

@ref: 5263

BacDive-ID: 7672

DSM-Number: 14235

keywords: 16S sequence, Bacteria, aerobe, Gram-positive, coccus-shaped

description: Micrococcus luteus Ballarat is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from activated sludge.

NCBI tax id

  • NCBI tax id: 1270
  • Matching level: species

strain history

@refhistory
5263<- M. Wieser <- A.M. Maszenan; Ballarat
120706CIP <- 2002, DSMZ <- M. Wieser <- A.M. Maszenan: strain Ballarat

doi: 10.13145/bacdive7672.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Micrococcus
  • species: Micrococcus luteus
  • full scientific name: Micrococcus luteus (Schroeter 1872) Cohn 1872 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacteridium luteum

@ref: 5263

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Micrococcus

species: Micrococcus luteus

full scientific name: Micrococcus luteus (Schroeter 1872) Cohn 1872 emend. Nouioui et al. 2018

strain designation: Ballarat

type strain: no

Morphology

cell morphology

  • @ref: 120706
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 120706

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5263TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
36167MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120706CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
5263positivegrowth28
36167positivegrowth37
57578positivegrowth26-40
120706positivegrowth22-41
120706nogrowth10
120706nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
57578aerobe
120706obligate aerobe

murein

  • @ref: 5263
  • murein short key: A11.60
  • type: A4alpha L-Lys-D-Asp; alpha-carboxyl group of D-Glu substituted by glycine

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
120706606565hippurate-hydrolysis
12070617632nitrate-reduction
12070616301nitrite-reduction
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917716lactose-fermentation
6837928087glycogen-fermentation
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose-fermentation
6837515824D-fructose-fermentation
6837516024D-mannose-fermentation
6837517306maltose-fermentation
6837517716lactose-fermentation
6837527082trehalose-fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate-reduction
6837517992sucrose-fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation
6837817634D-glucose-builds acid from
6837815824D-fructose-builds acid from
6837816024D-mannose-builds acid from
6837817306maltose-builds acid from
6837817716lactose-builds acid from
6837827082trehalose-builds acid from
6837816899D-mannitol-builds acid from
6837817151xylitol-builds acid from
6837828053melibiose-builds acid from
6837817632nitrate-reduction
6837816634raffinose-builds acid from
6837865327D-xylose-builds acid from
6837817992sucrose-builds acid from
68378320061methyl alpha-D-glucopyranoside-builds acid from
6837859640N-acetylglucosamine-builds acid from
6837829016arginine-hydrolysis
6837816199urea-hydrolysis

antibiotic resistance

@refmetaboliteis antibioticis sensitiveChEBIsensitivity conc.
68378lysostaphinyesyes
68375novobiocinyesyes283681.8 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837815688acetoinyes
6837515688acetoinno
12070635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6837815688acetoin+
6837515688acetoin-
12070615688acetoin-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
68378urease-3.5.1.5
68378arginine dihydrolase-3.5.3.6
68378alkaline phosphatase-3.1.3.1
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase+3.4.19.3
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase+
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5
68379catalase+1.11.1.6
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
120706oxidase-
120706beta-galactosidase-3.2.1.23
120706alcohol dehydrogenase-1.1.1.1
120706gelatinase+/-
120706amylase-
120706DNase+/-
120706caseinase+3.4.21.50
120706catalase+1.11.1.6
120706coagulase-
120706tween esterase-
120706gamma-glutamyltransferase-2.3.2.2
120706lysine decarboxylase-4.1.1.18
120706ornithine decarboxylase-4.1.1.17
120706phenylalanine ammonia-lyase-4.3.1.24
120706urease-3.5.1.5

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
57578-+++--+---+---------+
57578-+++--+---+-+---+-+-+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57578-+---+---------+----
120706-+-+-+-----+---+----

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
57578-----------------+++------

API STA

@refGLUFRUMNEMALLACTREMANXLTMELNITPALVPRAFXYLSACMDGNAGADHURELSTR
57578-----------+--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120706---------------------------------------------------------------------------+-----------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5263activated sludgeVictoria, BallaratAustraliaAUSAustralia and Oceania
57578Activated sludgeAustraliaAUSAustralia and Oceania
120706Environment, Activated sludgeVictoriaAustraliaAUSAustralia and Oceania

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Activated sludge

taxonmaps

  • @ref: 69479
  • File name: preview.99_746.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_453;97_519;98_597;99_746&stattab=map
  • Last taxonomy: Micrococcus
  • 16S sequence: AJ409096
  • Sequence Identity:
  • Total samples: 56744
  • soil counts: 6060
  • aquatic counts: 9695
  • animal counts: 37863
  • plant counts: 3126

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
52631Risk group (German classification)
1207061Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5263
  • description: Micrococcus luteus 16S rRNA gene, strain Ballarat
  • accession: AJ409096
  • length: 1484
  • database: nuccore
  • NCBI tax ID: 1270

External links

@ref: 5263

culture collection no.: DSM 14235, CCM 4960, CCUG 47203, CIP 107660

straininfo link

  • @ref: 77115
  • straininfo: 110943

literature

  • topic: Phylogeny
  • Pubmed-ID: 11931177
  • title: Emended descriptions of the genus Micrococcus, Micrococcus luteus (Cohn 1872) and Micrococcus lylae (Kloos et al. 1974).
  • authors: Wieser M, Denner EB, Kampfer P, Schumann P, Tindall B, Steiner U, Vybiral D, Lubitz W, Maszenan AM, Patel BK, Seviour RJ, Radax C, Busse HJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-2-629
  • year: 2002
  • mesh: Air Microbiology, Art, Benzoquinones/analysis, Micrococcus/*classification/isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Paleontology, Peptidoglycan/analysis, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Sequence Homology, Nucleic Acid, Sewage/microbiology, Species Specificity, Spectroscopy, Fourier Transform Infrared
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
5263Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14235)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14235
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36167Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5120
57578Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47203)https://www.ccug.se/strain?id=47203
68375Automatically annotated from API ID32STA
68378Automatically annotated from API STA
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77115Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID110943.1StrainInfo: A central database for resolving microbial strain identifiers
120706Curators of the CIPCollection of Institut Pasteur (CIP 107660)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107660