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Strain identifier

BacDive ID: 7640

Type strain: No

Species: Kocuria rosea

Strain history: IAM 14819 <-- ATCC 49321 <-- J. M. Poston.

NCBI tax ID(s): 1275 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4826

BacDive-ID: 7640

DSM-Number: 12801

keywords: genome sequence, Bacteria, psychrophilic

description: Kocuria rosea DSM 12801 is a psychrophilic bacterium that was isolated from goldfish aquarium.

NCBI tax id

  • NCBI tax id: 1275
  • Matching level: species

strain history

doi: 10.13145/bacdive7640.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Kocuria
  • species: Kocuria rosea
  • full scientific name: Kocuria rosea (Flügge 1886) Stackebrandt et al. 1995
  • synonyms

    @refsynonym
    20215Kocuria erythromyxa
    20215Micrococcus roseus
    20215Deinococcus erythromyxa
    20215Pelczaria aurantia

@ref: 4826

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Kocuria

species: Kocuria rosea

full scientific name: Kocuria rosea (Flügge 1886) Stackebrandt et al. 1995

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 97.66

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4826LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
4826BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
33003MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)

culture temp

@refgrowthtypetemperaturerange
4826positivegrowth22psychrophilic
33003positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.9

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 64.728

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2), MK-9(H2)

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
4826goldfish aquariumUSAUSANorth America
67770Goldfish aquariumUSAUSANorth AmericaBethesda, MD

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Water reservoir (Aquarium/pool)
#Host#Fishes

Safety information

risk assessment

  • @ref: 4826
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kocuria rosea strain ATCC 493211275.7wgspatric1275
67770Kocuria rosea ATCC 49321GCA_003124025contigncbi1275
66792Vibrio parahaemolyticus CFSAN022332GCA_002198565contigpatric670

GC content

@refGC-contentmethod
482660thermal denaturation, midpoint method (Tm)
482659high performance liquid chromatography (HPLC)
6777072high performance liquid chromatography (HPLC)

External links

@ref: 4826

culture collection no.: DSM 12801, ATCC 49321, JCM 21325, CIP 106741, IAM 14819, IFO 15588, NBRC 15588

straininfo link

@refpassport
20218http://www.straininfo.net/strains/114128
20218http://www.straininfo.net/strains/114126

literature

topicPubmed-IDtitleauthorsjournalDOIyearmesh
Phylogeny10939645Pelczaria aurantia ATCC 49321T (=DSM 12801T) is a strain of Kocuria rosea (Flugge 1886) Stackebrandt et al. 1995.Schumann P, Tindall BJ, Mendrock U, Kramer I, Stackebrandt EInt J Syst Evol Microbiol10.1099/00207713-50-4-14212000DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Micrococcus/chemistry/*classification/genetics, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis
Phylogeny10939680The status of the genus Pelczaria (Poston 1994) and the species Pelczaria aurantia (Poston 1994). Request for an Opinion.Tindall BJ, Schumann P, Stackebrandt EInt J Syst Evol Microbiol10.1099/00207713-50-4-16952000Bacteria/*classification, Phylogeny
Genetics29930075Genome Sequences for Three Strains of Kocuria rosea, Including the Type Strain.Trachtenberg AM, Goen AE, MacLea KSGenome Announc10.1128/genomeA.00594-182018

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4826Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12801)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12801
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33003Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18905
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)