Strain identifier

BacDive ID: 7627

Type strain: Yes

Species: Arthrobacter livingstonensis

Strain Designation: LI2

Strain history: DSM 22825 <-- L. Ganzert LI2 <-- F. Bajerski.

NCBI tax ID(s): 670078 (species)

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General

@ref: 16537

BacDive-ID: 7627

DSM-Number: 22825

keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, Gram-positive

description: Arthrobacter livingstonensis LI2 is a psychrophilic, Gram-positive bacterium that was isolated from initial soil covered by a moss layer.

NCBI tax id

  • NCBI tax id: 670078
  • Matching level: species

strain history

@refhistory
16537<- L. Ganzert, Alfred Wegener Inst. Polar and Marine Res. in the Helmholtz Association, Res. Unit Potsdam, Germany; LI2 <- F. Bajerski
67770DSM 22825 <-- L. Ganzert LI2 <-- F. Bajerski.

doi: 10.13145/bacdive7627.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter livingstonensis
  • full scientific name: Arthrobacter livingstonensis Ganzert et al. 2011

@ref: 16537

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter livingstonensis

full scientific name: Arthrobacter livingstonensis Ganzert et al. 2011

strain designation: LI2

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

colony morphology

@refcolony colormedium used
69294CreamISP 2
69294CreamISP 4
69294CreamISP 5
69294CreamISP 6
69294Creamsuter without tyrosine
69294Cream whitesuter with tyrosine
69294Pale brown (8025)ISP 7

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69294noAerial myceliumISP 2
69294noAerial myceliumISP 3
69294noAerial myceliumISP 4
69294noAerial myceliumISP 5
69294noAerial myceliumISP 6
69294noAerial myceliumISP 7
69294noAerial myceliumsuter with tyrosine
69294noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
69294noMelanin
69294nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
69294DSM_22825_image3.pngPlates (DSM 65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69294DSM_22825_image4.pngPlates (DSM 65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 16537
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16537positivegrowth16psychrophilic
67770positivegrowth15psychrophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.99

halophily

  • @ref: 69294
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

murein

  • @ref: 16537
  • murein short key: A11.26

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2), MK-7(H2), MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6929422599arabinose+growth
6929462968cellulose-growth
6929428757fructose+growth
6929417234glucose+growth
6929417268inositol+growth
6929437684mannose+growth
6929416634raffinose+growth
6929426546rhamnose+/-growth
6929417992sucrose+growth
6929418222xylose+/-growth
6837917632nitrate+reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69294++---++--+---------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69294-++-++++-++++-++-+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentcountryorigin.country
16537initial soil covered by a moss layerLivingston IslandAustralia and Oceania
67770Moss-covered soil from Livingston IslandSouth Shetland IslandsAntarcticaAntarcticaATA

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Moss

Safety information

risk assessment

  • @ref: 16537
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16537
  • description: Arthrobacter livingstonensis strain LI2 16S ribosomal RNA gene, partial sequence
  • accession: GQ406811
  • length: 1379
  • database: ena
  • NCBI tax ID: 670078

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arthrobacter livingstonensis LI22866276103draftimg670078
67770Arthrobacter livingstonensis LI2GCA_003219815scaffoldncbi670078

GC content

  • @ref: 16537
  • GC-content: 64.7
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: no
  • confidence: 83
  • training_data: no

External links

@ref: 16537

culture collection no.: DSM 22825, JCM 17807, NCCB 100314

straininfo link

  • @ref: 77071
  • straininfo: 399914

literature

  • topic: Phylogeny
  • Pubmed-ID: 20511467
  • title: Arthrobacter livingstonensis sp. nov. and Arthrobacter cryotolerans sp. nov., salt-tolerant and psychrotolerant species from Antarctic soil.
  • authors: Ganzert L, Bajerski F, Mangelsdorf K, Lipski A, Wagner D
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.021022-0
  • year: 2010
  • mesh: Aerobiosis, Anaerobiosis, Antarctic Regions, Arthrobacter/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, Cold Temperature, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16537Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22825)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22825
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69294Wink, J.https://cdn.dsmz.de/wink/DSM%2022825.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77071Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399914.1StrainInfo: A central database for resolving microbial strain identifiers