Strain identifier

BacDive ID: 7627

Type strain: Yes

Species: Arthrobacter livingstonensis

Strain Designation: LI2

Strain history: DSM 22825 <-- L. Ganzert LI2 <-- F. Bajerski.

NCBI tax ID(s): 670078 (species)

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General

@ref: 16537

BacDive-ID: 7627

DSM-Number: 22825

keywords: genome sequence, 16S sequence, Bacteria

description: Arthrobacter livingstonensis LI2 is a bacterium that was isolated from initial soil covered by a moss layer.

NCBI tax id

  • NCBI tax id: 670078
  • Matching level: species

strain history

@refhistory
16537<- L. Ganzert, Alfred Wegener Inst. Polar and Marine Res. in the Helmholtz Association, Res. Unit Potsdam, Germany; LI2 <- F. Bajerski
67770DSM 22825 <-- L. Ganzert LI2 <-- F. Bajerski.

doi: 10.13145/bacdive7627.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter livingstonensis
  • full scientific name: Arthrobacter livingstonensis Ganzert et al. 2011

@ref: 16537

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter livingstonensis

full scientific name: Arthrobacter livingstonensis Ganzert et al. 2011

strain designation: LI2

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69294CreamISP 2
69294CreamISP 4
69294CreamISP 5
69294CreamISP 6
69294Creamsuter without tyrosine
69294Cream whitesuter with tyrosine
69294Pale brown (8025)ISP 7

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69294noAerial myceliumISP 2
69294noAerial myceliumISP 3
69294noAerial myceliumISP 4
69294noAerial myceliumISP 5
69294noAerial myceliumISP 6
69294noAerial myceliumISP 7
69294noAerial myceliumsuter with tyrosine
69294noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
69294noMelanin
69294nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
69294DSM_22825_image3.pngPlates (DSM 65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69294DSM_22825_image4.pngPlates (DSM 65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 16537
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
16537positivegrowth16
67770positivegrowth15

Physiology and metabolism

halophily

  • @ref: 69294
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

murein

  • @ref: 16537
  • murein short key: A11.26

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2), MK-7(H2), MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6929422599arabinose+growth
6929462968cellulose-growth
6929428757fructose+growth
6929417234glucose+growth
6929417268inositol+growth
6929437684mannose+growth
6929416634raffinose+growth
6929426546rhamnose+/-growth
6929417992sucrose+growth
6929418222xylose+/-growth
6837917632nitrate+reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69294++---++--+---------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69294-++-++++-++++-++-+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentcountryorigin.country
16537initial soil covered by a moss layerLivingston IslandAustralia and Oceania
67770Moss-covered soil from Livingston IslandSouth Shetland IslandsAntarcticaAntarcticaATA

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Moss

Safety information

risk assessment

  • @ref: 16537
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16537
  • description: Arthrobacter livingstonensis strain LI2 16S ribosomal RNA gene, partial sequence
  • accession: GQ406811
  • length: 1379
  • database: nuccore
  • NCBI tax ID: 670078

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arthrobacter livingstonensis LI22866276103draftimg670078
67770Arthrobacter livingstonensis LI2GCA_003219815scaffoldncbi670078

GC content

  • @ref: 16537
  • GC-content: 64.7
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

  • @ref: 69481
  • trait: spore-forming
  • model: spore-forming
  • description: Ability to form endo- or exospores
  • prediction: no
  • confidence: 83
  • training_data: no

External links

@ref: 16537

culture collection no.: DSM 22825, JCM 17807, NCCB 100314

straininfo link

  • @ref: 77071
  • straininfo: 399914

literature

  • topic: Phylogeny
  • Pubmed-ID: 20511467
  • title: Arthrobacter livingstonensis sp. nov. and Arthrobacter cryotolerans sp. nov., salt-tolerant and psychrotolerant species from Antarctic soil.
  • authors: Ganzert L, Bajerski F, Mangelsdorf K, Lipski A, Wagner D
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.021022-0
  • year: 2010
  • mesh: Aerobiosis, Anaerobiosis, Antarctic Regions, Arthrobacter/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, Cold Temperature, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16537Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22825)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22825
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69294Wink, J.https://cdn.dsmz.de/wink/DSM%2022825.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77071Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399914.1StrainInfo: A central database for resolving microbial strain identifiers