Strain identifier

BacDive ID: 7611

Type strain: Yes

Species: Arthrobacter koreensis

Strain Designation: CA15-8

Strain history: CIP <- 2013, DSMZ <- KCTC <- strain: CA15-8

NCBI tax ID(s): 199136 (species)

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General

@ref: 6495

BacDive-ID: 7611

DSM-Number: 16760

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Arthrobacter koreensis CA15-8 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 199136
  • Matching level: species

strain history

@refhistory
6495<- KCTC
67770KCTC 9922 <-- J.-S. Lee CA15-8.
67771<- JS Lee, KRIBB
120470CIP <- 2013, DSMZ <- KCTC <- strain: CA15-8

doi: 10.13145/bacdive7611.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter koreensis
  • full scientific name: Arthrobacter koreensis Lee et al. 2003

@ref: 6495

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter koreensis

full scientific name: Arthrobacter koreensis Lee et al. 2003

strain designation: CA15-8

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
67771positive
69480positive100
120470positiverod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6495TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
33588MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120470CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6495positivegrowth28mesophilic
33588positivegrowth30mesophilic
59383positivegrowth30-42
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
59383aerobe
67771aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.967

murein

  • @ref: 6495
  • murein short key: A11.27
  • type: A3alpha L-Lys-L-Thr-L-Ala2

observation

@refobservation
67770quinones: MK-8(H2), MK-9(H2)
67771quinones: MK-8(H_2_), MK-9(H_2_)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate+reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose-fermentation
6837515824D-fructose-fermentation
6837516024D-mannose-fermentation
6837517306maltose-fermentation
6837517716lactose-fermentation
6837527082trehalose-fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose-fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation
6837817634D-glucose-builds acid from
6837815824D-fructose-builds acid from
6837816024D-mannose-builds acid from
6837817306maltose-builds acid from
6837817716lactose-builds acid from
6837827082trehalose-builds acid from
6837816899D-mannitol-builds acid from
6837817151xylitol-builds acid from
6837828053melibiose-builds acid from
6837817632nitrate-reduction
6837816634raffinose-builds acid from
6837865327D-xylose-builds acid from
6837817992sucrose-builds acid from
68378320061methyl alpha-D-glucopyranoside-builds acid from
6837859640N-acetylglucosamine-builds acid from
6837829016arginine-hydrolysis
6837816199urea-hydrolysis

antibiotic resistance

@refmetaboliteis antibioticis sensitiveChEBIsensitivity conc.
68378lysostaphinyesyes
68375novobiocinyesyes283681.8 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837815688acetoinno
6837515688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6837815688acetoin-
6837515688acetoin-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68378urease-3.5.1.5
68378arginine dihydrolase-3.5.3.6
68378alkaline phosphatase-3.1.3.1
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375alkaline phosphatase-3.1.3.1
68375L-arginine arylamidase+
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
59383++----+-------------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
59383--++-+--------------

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
59383--------------+--+--------

API STA

@refGLUFRUMNEMALLACTREMANXLTMELNITPALVPRAFXYLSACMDGNAGADHURELSTR
59383--------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6495soilDaejon CityRepublic of KoreaKORAsia
67770SoilDaejeonRepublic of KoreaKORAsia
67771From soilRepublic of KoreaKORAsia
120470Environment, SoilDaejeon cityRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_756.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_458;97_525;98_603;99_756&stattab=map
  • Last taxonomy: Arthrobacter
  • 16S sequence: AY116496
  • Sequence Identity:
  • Total samples: 138
  • soil counts: 47
  • aquatic counts: 12
  • animal counts: 67
  • plant counts: 12

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
64951Risk group (German classification)
1204701Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6495
  • description: Arthrobacter koreensis strain CA15-8 16S ribosomal RNA gene, partial sequence
  • accession: AY116496
  • length: 1471
  • database: ena
  • NCBI tax ID: 199136

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arthrobacter koreensis strain DSM 16760199136.7wgspatric199136
67770Arthrobacter koreensis DSM 16760GCA_009193255contigncbi199136

GC content

@refGC-contentmethod
649563
6777061-65high performance liquid chromatography (HPLC)
6777161.0-65.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno56.237no
gram-positiveyes92.379yes
anaerobicno99.295yes
aerobicyes91.825yes
halophileno69.66no
spore-formingno88.515no
glucose-utilyes85.107no
flagellatedno94.348no
thermophileno98.629yes
glucose-fermentno87.853no

External links

@ref: 6495

culture collection no.: DSM 16760, CIP 110641, IFO 16787, KCTC 9922, NBRC 16787, CCUG 51945, JCM 12361, CIP 108160

straininfo link

  • @ref: 77055
  • straininfo: 127978

literature

  • topic: Phylogeny
  • Pubmed-ID: 13130006
  • title: Arthrobacter koreensis sp. nov., a novel alkalitolerant bacterium from soil.
  • authors: Lee JS, Lee KC, Pyun YR, Bae KS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02492-0
  • year: 2003
  • mesh: Arthrobacter/classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Peptidoglycan/chemistry, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
6495Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16760)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16760
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33588Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30445
59383Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 51945)https://www.ccug.se/strain?id=51945
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68375Automatically annotated from API ID32STA
68378Automatically annotated from API STA
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77055Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID127978.1StrainInfo: A central database for resolving microbial strain identifiers
120470Curators of the CIPCollection of Institut Pasteur (CIP 110641)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110641