Strain identifier
BacDive ID: 7518
Type strain: 
Species: Arthrobacter alkaliphilus
Strain Designation: LC6
Strain history: IAM 15383 <-- L. Ding LC6.
NCBI tax ID(s): 369936 (species)
version 8.1 (current version)
General
@ref: 16811
BacDive-ID: 7518
DSM-Number: 23368
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Arthrobacter alkaliphilus LC6 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from filtration substrate made from volcanic rock.
NCBI tax id
- NCBI tax id: 369936
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16811 | <- JCM/RIKEN <- IAM <- L. Ding, Hirose Lab. Environmental Microorganism, Funabashi, Japan; LC6 |
| 67770 | IAM 15383 <-- L. Ding LC6. |
doi: 10.13145/bacdive7518.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter alkaliphilus
- full scientific name: Arthrobacter alkaliphilus Ding et al. 2009
@ref: 16811
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter alkaliphilus
full scientific name: Arthrobacter alkaliphilus Ding et al. 2009
strain designation: LC6
type strain: yes
Morphology
cell morphology
- @ref: 32315
- gram stain: positive
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 32315
- production: yes
Culture and growth conditions
culture medium
- @ref: 16811
- name: RICH MEDIUM (DSMZ Medium 736)
- growth: yes
- link: https://mediadive.dsmz.de/medium/736
- composition: Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16811 | positive | growth | 28 | mesophilic |
| 32315 | positive | growth | 05-40 | |
| 32315 | positive | optimum | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32315 | positive | growth | 06-11 | alkaliphile |
| 32315 | positive | optimum | 8.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 32315
- oxygen tolerance: aerobe
spore formation
- @ref: 32315
- spore formation: no
halophily
- @ref: 32315
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 03-07 %
murein
- @ref: 16811
- murein short key: A11.23
- type: A3alpha L-Lys-L-Ser-L-Thr-L-Ala
observation
- @ref: 67770
- observation: quinones: MK-9(H2), MK-10(H2)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32315 | 17234 | glucose | + | carbon source |
| 32315 | 17716 | lactose | + | carbon source |
| 32315 | 17306 | maltose | + | carbon source |
| 32315 | 29864 | mannitol | + | carbon source |
| 32315 | 33942 | ribose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32315 | acid phosphatase | + | 3.1.3.2 |
| 32315 | alkaline phosphatase | + | 3.1.3.1 |
| 32315 | alpha-galactosidase | + | 3.2.1.22 |
| 32315 | catalase | + | 1.11.1.6 |
| 32315 | pyrazinamidase | + | 3.5.1.B15 |
| 32315 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16811 | filtration substrate made from volcanic rock | Niigata | Japan | JPN | Asia |
| 67770 | Filtration substrate made from volcanic rock from Niigata | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Volcanic |
| #Environmental | #Terrestrial | #Geologic |
Safety information
risk assessment
- @ref: 16811
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16811
- description: Arthrobacter alkaliphilus gene for 16S rRNA, partial sequence
- accession: AB248527
- length: 1457
- database: ena
- NCBI tax ID: 369936
GC content
| @ref | GC-content | method |
|---|---|---|
| 16811 | 69.0 | high performance liquid chromatography (HPLC) |
| 32315 | 69 | |
| 67770 | 69 | high performance liquid chromatography (HPLC) |
External links
@ref: 16811
culture collection no.: DSM 23368, CCTCC AB 206013, IAM 15383, JCM 218275, JCM 21827
straininfo link
- @ref: 76963
- straininfo: 407849
literature
- topic: Phylogeny
- Pubmed-ID: 19329620
- title: Four novel Arthrobacter species isolated from filtration substrate.
- authors: Ding L, Hirose T, Yokota A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65301-0
- year: 2009
- mesh: Amino Acids/analysis, Arthrobacter/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16811 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23368) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23368 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32315 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28552 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 76963 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407849.1 | StrainInfo: A central database for resolving microbial strain identifiers |