Strain identifier

BacDive ID: 7518

Type strain: Yes

Species: Arthrobacter alkaliphilus

Strain Designation: LC6

Culture col. no.: DSM 23368, CCTCC AB 206013, IAM 15383, JCM 218275

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16811

BacDive-ID: 7518

DSM-Number: 23368

keywords: gram-positive, mesophilic, aerobe, Bacteria, 16S sequence, rod-shaped

description: Arthrobacter alkaliphilus LC6 is an aerobe, mesophilic, gram-positive bacterium that was isolated from filtration substrate made from volcanic rock.

strain history: <- JCM/RIKEN <- IAM <- L. Ding, Hirose Lab. Environmental Microorganism, Funabashi, Japan; LC6

doi: 10.13145/bacdive7518.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter alkaliphilus
  • full scientific name: Arthrobacter alkaliphilus Ding et al. 2009

@ref: 16811

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter alkaliphilus

full scientific name: Arthrobacter alkaliphilus Ding et al. 2009

strain designation: LC6

type strain: yes

Morphology

cell morphology

  • @ref: 32315
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 32315
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16811
  • name: RICH MEDIUM (DSMZ Medium 736)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium736.pdf

culture temp

@refgrowthtypetemperaturerange
16811positivegrowth28mesophilic
32315positivegrowth05-40
32315positiveoptimum30mesophilic

culture pH

@refabilitytypepH
32315positivegrowth06-11
32315positiveoptimum8.5

Physiology and metabolism

oxygen tolerance

  • @ref: 32315
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32315
  • spore formation: no

halophily

  • @ref: 32315
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 03-07 %

murein

  • @ref: 16811
  • murein short key: A11.23
  • type: A3alpha L-Lys-L-Ser-L-Thr-L-Ala

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3231517234glucose+carbon source
3231517716lactose+carbon source
3231517306maltose+carbon source
3231529864mannitol+carbon source
3231533942ribose+carbon source

enzymes

@refvalueactivityec
32315acid phosphatase+3.1.3.2
32315alkaline phosphatase+3.1.3.1
32315alpha-galactosidase+3.2.1.22
32315catalase+1.11.1.6
32315pyrazinamidase+3.5.1.B15
32315urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 16811
  • sample type: filtration substrate made from volcanic rock
  • geographic location: Niigata
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Volcanic

Safety information

risk assessment

  • @ref: 16811
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16811
  • description: Arthrobacter alkaliphilus gene for 16S rRNA, partial sequence
  • accession: AB248527
  • length: 1457
  • database: ena
  • NCBI tax ID: 369936

GC content

@refGC-contentmethod
1681169.0high performance liquid chromatography (HPLC)
3231569

External links

@ref: 16811

culture collection no.: DSM 23368, CCTCC AB 206013, IAM 15383, JCM 218275

straininfo link

@refpassport
20218http://www.straininfo.net/strains/841272
20218http://www.straininfo.net/strains/841273

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
16811Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23368)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23368
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2855210.1099/ijs.0.65301-0
32315Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28552