Strain identifier

BacDive ID: 7319

Type strain: Yes

Species: Curtobacterium plantarum

Strain Designation: CL63

Strain history: CIP <- 2005, DSMZ <- ATCC <- J.M. Dunleavy, Iowa State Univ., Ames, Iowa, USA: strain CL63

NCBI tax ID(s): 221276 (species)

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General

@ref: 2970

BacDive-ID: 7319

DSM-Number: 7069

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, motile, rod-shaped

description: Curtobacterium plantarum CL63 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from soybean leaves, Glycine max.

NCBI tax id

  • NCBI tax id: 221276
  • Matching level: species

strain history

@refhistory
2970<- ATCC <- J.M. Dunleavy, CL63
121857CIP <- 2005, DSMZ <- ATCC <- J.M. Dunleavy, Iowa State Univ., Ames, Iowa, USA: strain CL63

doi: 10.13145/bacdive7319.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Curtobacterium
  • species: Curtobacterium plantarum
  • full scientific name: Curtobacterium plantarum Dunleavy 1989

@ref: 2970

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Curtobacterium

species: Curtobacterium plantarum

full scientific name: Curtobacterium plantarum Dunleavy 1989

strain designation: CL63

type strain: yes

Morphology

cell morphology

  • @ref: 121857
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 121857

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2970TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
36773MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121857CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
121857CIP Medium 338yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=338

culture temp

@refgrowthtypetemperaturerange
2970positivegrowth28mesophilic
36773positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121857
  • oxygen tolerance: facultative anaerobe

murein

  • @ref: 2970
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
121857nitrate+reduction17632
121857nitrite-reduction16301

metabolite production

  • @ref: 121857
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
121857oxidase-
121857alcohol dehydrogenase-1.1.1.1
121857catalase+1.11.1.6
121857lysine decarboxylase-4.1.1.18
121857ornithine decarboxylase-4.1.1.17
121857urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121857-+++-+----+++----+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121857---+++---+/-+++-+-+/-+---+-+++-+--++------------+-+/-+-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
2970soybean leaves, Glycine maxGlycine maxIowaUSAUSANorth America
121857Plant, Soybean leavesIowaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1960.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_310;97_507;98_583;99_1960&stattab=map
  • Last taxonomy: Pantoea
  • 16S sequence: JN175348
  • Sequence Identity:
  • Total samples: 1833
  • soil counts: 48
  • aquatic counts: 214
  • animal counts: 1357
  • plant counts: 214

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
29701Risk group (German classification)
1218571Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Curtobacterium plantarum 16S-23S ribosomal RNA intergenic spacer region, partial sequenceAY191511671ena221276
20218Curtobacterium plantarum strain CIP 108988 16S ribosomal RNA gene, complete sequenceJN1753481440ena221276

GC content

  • @ref: 2970
  • GC-content: 76
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 2970

culture collection no.: DSM 7069, ATCC 49174, CIP 108988, LMG 16222

straininfo link

  • @ref: 76769
  • straininfo: 8241

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2970Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7069)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7069
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36773Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6678
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76769Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8241.1StrainInfo: A central database for resolving microbial strain identifiers
121857Curators of the CIPCollection of Institut Pasteur (CIP 108988)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108988