Strain identifier
BacDive ID: 7264
Type strain: 
Species: Agromyces mediolanus
Strain history: K. Suzuki CNF 134 <-- R. M. Keddie A112.
NCBI tax ID(s): 41986 (species)
version 8.1 (current version)
General
@ref: 2039
BacDive-ID: 7264
DSM-Number: 40
keywords: 16S sequence, Bacteria, mesophilic
description: Agromyces mediolanus DSM 40 is a mesophilic bacterium that was isolated from Pressed yeast cake.
NCBI tax id
- NCBI tax id: 41986
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2039 | <- ATCC <- IMRU, 130 (Flavobacterium dehydrogenans) <- W. Charney |
| 67770 | K. Suzuki CNF 134 <-- R. M. Keddie A112. |
doi: 10.13145/bacdive7264.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Agromyces
- species: Agromyces mediolanus
- full scientific name: Agromyces mediolanus (ex Mamoli 1939) Suzuki et al. 1996
@ref: 2039
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Agromyces
species: Agromyces mediolanus
full scientific name: Agromyces mediolanus (ex Mamoli 1939) Suzuki et al. 1996
type strain: no
Culture and growth conditions
culture medium
- @ref: 2039
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2039 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 2039 | oxoalkylxanthines |
| 67770 | Oxoalkylxanthines |
murein
- @ref: 2039
- murein short key: B07
- type: B2gamma {Gly} [L-Dab] D-Glu-D-Dab
observation
- @ref: 67770
- observation: quinones: MK-12
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Pressed yeast cake
taxonmaps
- @ref: 69479
- File name: preview.99_36836.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3478;97_4265;98_27117;99_36836&stattab=map
- Last taxonomy: Agromyces mediolanus
- 16S sequence: LC066588
- Sequence Identity:
- Total samples: 6411
- soil counts: 3220
- aquatic counts: 780
- animal counts: 1854
- plant counts: 557
Safety information
risk assessment
- @ref: 2039
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Agromyces mediolanus gene for 16S ribosomal RNA, strain: CNF134 | D45052 | 1484 | ena | 41986 |
| 67770 | Agromyces mediolanus gene for 16S ribosomal RNA, partial sequence, strain: JCM 1376 | LC066588 | 1419 | ena | 41986 |
GC content
- @ref: 67770
- GC-content: 72.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 2039
culture collection no.: DSM 40, ATCC 13930, JCM 1376, IAM 15149, IFO 15700, KCCM 35448, LMG 18115, LMG 4015, NBRC 15700
straininfo link
- @ref: 76715
- straininfo: 114196
literature
- topic: Phylogeny
- Pubmed-ID: 20639226
- title: Agromyces soli sp. nov., isolated from farm soil.
- authors: Lee M, Ten LN, Woo SG, Park J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.021568-0
- year: 2010
- mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Amino Acids/analysis, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2039 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 76715 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID114196.1 | StrainInfo: A central database for resolving microbial strain identifiers |