Strain identifier
BacDive ID: 7198
Type strain: 
Species: Methylobacterium dankookense
Strain Designation: SW08-7
Strain history: <- TY Ahn, Dankook Univ.
NCBI tax ID(s): 560405 (species)
version 9.1 (current version)
General
@ref: 16324
BacDive-ID: 7198
DSM-Number: 22415
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative
description: Methylobacterium dankookense SW08-7 is an aerobe, Gram-negative bacterium that was isolated from drinking water of a water purifier.
NCBI tax id
- NCBI tax id: 560405
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16324 | <- T.-Y. Ahn, Dankook Univ., Cheonan, Korea; SW08-7 <- S.-W. Lee |
| 67771 | <- TY Ahn, Dankook Univ. |
doi: 10.13145/bacdive7198.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Methylobacterium
- species: Methylobacterium dankookense
- full scientific name: Methylobacterium dankookense Lee et al. 2013
@ref: 16324
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylobacteriaceae
genus: Methylobacterium
species: Methylobacterium dankookense
full scientific name: Methylobacterium dankookense Lee et al. 2013
strain designation: SW08-7
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 67771 | negative | |
| 69480 | negative | 97.287 |
Culture and growth conditions
culture medium
- @ref: 16324
- name: PLATE COUNT AGAR (DSMZ Medium 464)
- growth: yes
- link: https://mediadive.dsmz.de/medium/464
- composition: Name: PLATE COUNT AGAR (DSMZ Medium 464) Composition: Agar 15.0 g/l Tryptone 5.0 g/l Yeast extract 2.5 g/l Dextrose 1.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 16324 | positive | growth | 25 |
| 67771 | positive | growth | 25 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67771
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16324 | drinking water of a water purifier | Cheonan | Republic of Korea | KOR | Asia |
| 67771 | From dringking water | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Freshwater
taxonmaps
- @ref: 69479
- File name: preview.99_43605.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15368;96_285;97_24969;98_31643;99_43605&stattab=map
- Last taxonomy: Methylobacterium dankookense
- 16S sequence: FJ155589
- Sequence Identity:
- Total samples: 2412
- soil counts: 383
- aquatic counts: 372
- animal counts: 986
- plant counts: 671
Safety information
risk assessment
- @ref: 16324
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16324
- description: Methylobacterium dankookense strain SW08-7 16S ribosomal RNA gene, partial sequence
- accession: FJ155589
- length: 1424
- database: nuccore
- NCBI tax ID: 560405
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methylobacterium dankookense SW08-7 | GCA_902141855 | contig | ncbi | 560405 |
| 66792 | Methylobacterium dankookense DSM 22415 | GCA_022179165 | contig | ncbi | 560405 |
GC content
- @ref: 16324
- GC-content: 68.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.287 | yes |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.826 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.26 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.356 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.499 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 72.831 | no |
External links
@ref: 16324
culture collection no.: DSM 22415, KCTC 22512
straininfo link
- @ref: 76651
- straininfo: 400235
literature
- topic: Phylogeny
- Pubmed-ID: 20127465
- title: Methylobacterium dankookense sp. nov., isolated from drinking water.
- authors: Lee SW, Oh HW, Lee KH, Ahn TY
- journal: J Microbiol
- DOI: 10.1007/s12275-009-0126-6
- year: 2010
- mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Hydrogen-Ion Concentration, Methylobacterium/chemistry/*classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16324 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22415) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22415 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 76651 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400235.1 | StrainInfo: A central database for resolving microbial strain identifiers |