Strain identifier
BacDive ID: 7177
Type strain: 
Species: Methylobacterium aquaticum
Strain Designation: 189
Strain history: <- C. Knief, ETHZ, Switzerland; strain 189 <- C. Knief, Laboratory of Plant Microbe Interactions (LIPM), Toulouse, France
NCBI tax ID(s): 270351 (species)
General
@ref: 17440
BacDive-ID: 7177
DSM-Number: 23931
keywords: 16S sequence, Bacteria, mesophilic
description: Methylobacterium aquaticum 189 is a mesophilic bacterium that was isolated from silique surface of Arabidopsis thaliana.
NCBI tax id
- NCBI tax id: 270351
- Matching level: species
strain history
- @ref: 17440
- history: <- C. Knief, ETHZ, Switzerland; strain 189 <- C. Knief, Laboratory of Plant Microbe Interactions (LIPM), Toulouse, France
doi: 10.13145/bacdive7177.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Methylobacterium
- species: Methylobacterium aquaticum
- full scientific name: Methylobacterium aquaticum Gallego et al. 2005
@ref: 17440
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylobacteriaceae
genus: Methylobacterium
species: Methylobacterium aquaticum
full scientific name: Methylobacterium aquaticum Gallego et al. 2005
strain designation: 189
type strain: no
Culture and growth conditions
culture medium
- @ref: 17440
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 17440
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 17440
- sample type: silique surface of Arabidopsis thaliana
- host species: Arabidopsis thaliana
- country: Spain
- origin.country: ESP
- continent: Europe
- latitude: 40.5147
- longitude: -3.8969
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_3031.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15368;96_262;97_289;98_1400;99_3031&stattab=map
- Last taxonomy: Methylobacterium
- 16S sequence: FN868943
- Sequence Identity:
- Total samples: 9359
- soil counts: 1060
- aquatic counts: 1956
- animal counts: 4713
- plant counts: 1630
Safety information
risk assessment
- @ref: 17440
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17440
- description: Methylobacterium sp. 189 partial 16S rRNA gene, strain 189
- accession: FN868943
- length: 1406
- database: ena
- NCBI tax ID: 767688
External links
@ref: 17440
culture collection no.: DSM 23931
straininfo link
- @ref: 76630
- straininfo: 394850
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17440 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23931) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23931 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 76630 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID394850.1 | StrainInfo: A central database for resolving microbial strain identifiers |