Strain identifier
BacDive ID: 7164
Type strain: 
Species: Methylobacterium sp.
Strain Designation: 109
Strain history: <- C. Knief, ETHZ; strain 109 <- C. Knief, Laboratory of Plant Microbe Interactions (LIPM), Toulouse, France
NCBI tax ID(s): 409 (species)
General
@ref: 17468
BacDive-ID: 7164
DSM-Number: 23977
keywords: 16S sequence, Bacteria, mesophilic
description: Methylobacterium sp. 109 is a mesophilic bacterium that was isolated from phyllosphere of Arabidopsis thaliana.
NCBI tax id
- NCBI tax id: 409
- Matching level: species
strain history
- @ref: 17468
- history: <- C. Knief, ETHZ; strain 109 <- C. Knief, Laboratory of Plant Microbe Interactions (LIPM), Toulouse, France
doi: 10.13145/bacdive7164.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Methylobacterium
- species: Methylobacterium sp.
- full scientific name: Methylobacterium Patt et al. 1976 (Approved Lists 1980)
@ref: 17468
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylobacteriaceae
genus: Methylobacterium
species: Methylobacterium sp.
full scientific name: Methylobacterium sp.
strain designation: 109
type strain: no
Morphology
colony morphology
- @ref: 17468
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 17468
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 17468
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 17468
- sample type: phyllosphere of Arabidopsis thaliana
- host species: Arabidopsis thaliana
- country: Spain
- origin.country: ESP
- continent: Europe
- latitude: 39.5825
- longitude: -3.9256
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
taxonmaps
- @ref: 69479
- File name: preview.99_585.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15368;96_372;97_420;98_479;99_585&stattab=map
- Last taxonomy: Methylobacterium
- 16S sequence: FN868940
- Sequence Identity:
- Total samples: 5324
- soil counts: 1088
- aquatic counts: 393
- animal counts: 2365
- plant counts: 1478
Sequence information
16S sequences
- @ref: 17468
- description: Methylobacterium sp. 109 partial 16S rRNA gene, strain 109
- accession: FN868940
- length: 1407
- database: ena
- NCBI tax ID: 767685
External links
@ref: 17468
culture collection no.: DSM 23977
straininfo link
- @ref: 76617
- straininfo: 394860
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17468 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23977) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23977 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 76617 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID394860.1 | StrainInfo: A central database for resolving microbial strain identifiers |