Strain identifier

BacDive ID: 7045

Type strain: Yes

Species: Methanothrix soehngenii

Strain Designation: Opfikon

Strain history: <- B. Schink <- B.A. Huser, strain Opfikon (Methanothrix soehngenii)

NCBI tax ID(s): 2223 (species)

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General

@ref: 974

BacDive-ID: 7045

DSM-Number: 2139

keywords: 16S sequence, Archaea, anaerobe

description: Methanothrix soehngenii Opfikon is an anaerobe archaeon that was isolated from anaerobic sewage sludge.

NCBI tax id

  • NCBI tax id: 2223
  • Matching level: species

strain history

  • @ref: 974
  • history: <- B. Schink <- B.A. Huser, strain Opfikon (Methanothrix soehngenii)

doi: 10.13145/bacdive7045.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanomicrobia
  • order: Methanosarcinales
  • family: Methanotrichaceae
  • genus: Methanothrix
  • species: Methanothrix soehngenii
  • full scientific name: Methanothrix soehngenii Huser et al. 1983

  • synonyms

    @refsynonym
    20215Methanosaeta concilii
    20215Methanothrix concilii

@ref: 974

domain: Archaea

phylum: Euryarchaeota

class: Methanomicrobia

order: Methanosarcinales

family: Methanosaetaceae

genus: Methanothrix

species: Methanothrix soehngenii

full scientific name: Methanothrix soehngenii Huser et al. 1983

strain designation: Opfikon

type strain: yes

Morphology

colony morphology

  • @ref: 974
  • incubation period: 8-14 days

Physiology and metabolism

oxygen tolerance

  • @ref: 974
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 974
  • sample type: anaerobic sewage sludge
  • geographic location: Zürich
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Sewage sludge
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_187165.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17656;96_68833;97_89477;98_121756;99_187165&stattab=map
  • Last taxonomy: Methanothrix
  • 16S sequence: X51423
  • Sequence Identity:
  • Total samples: 2748
  • soil counts: 587
  • aquatic counts: 1947
  • animal counts: 42
  • plant counts: 172

Safety information

risk assessment

  • @ref: 974
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
2021816S rRNA [Methanothrix soehngenii, Opfikon, DSM 2139, rRNA Partial, 194 nt, segment 2 of 3]S42668194ena2223
2021816S rRNA [Methanothrix soehngenii, Opfikon, DSM 2139, rRNA Partial, 186 nt, segment 3 of 3]S42673186ena2223
2021816S rRNA [Methanothrix soehngenii, Opfikon, DSM 2139, rRNA Partial, 159 nt, segment 1 of 3]S42880159ena2223
974Methanothrix soehngenii DNA for a ribosomal RNA gene clusterX514232416ena2223

GC content

@refGC-content
97452.3
97451.7

External links

@ref: 974

culture collection no.: DSM 2139

straininfo link

  • @ref: 76504
  • straininfo: 47549

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1380291Characterization of three thermophilic strains of Methanothrix ("Methanosaeta") thermophila sp. nov. and rejection of Methanothrix ("Methanosaeta") thermoacetophila.Kamagata Y, Kawasaki H, Oyaizu H, Nakamura K, Mikami E, Endo G, Koga Y, Yamasato KInt J Syst Bacteriol10.1099/00207713-42-3-4631992Bacterial Proteins/chemistry, Base Composition, Base Sequence, DNA, Bacterial/chemistry, Electrophoresis, Polyacrylamide Gel, Methanosarcinaceae/*classification/cytology/physiology, Molecular Sequence Data, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Sequence Homology, Nucleic Acid, Terminology as TopicEnzymology
Phylogeny2442138Antigenic distinctiveness, heterogeneity, and relationships of Methanothrix spp.Macario AJ, Conway de Macario EJ Bacteriol10.1128/jb.169.9.4099-4103.19871987Animals, Antibodies, Bacterial/biosynthesis, Antigens, Bacterial/*analysis/immunology, Epitopes/analysis, Euryarchaeota/classification/*immunology, Fluorescent Antibody Technique, Mice, Rabbits
Metabolism16347581Direct characterization of methanogens in two high-rate anaerobic biological reactors.Kobayashi HA, Conway de Macario E, Williams RS, Macario AJAppl Environ Microbiol10.1128/aem.54.3.693-698.19881988Anaerobiosis/physiology, Antibodies, Archaeal/metabolism, Antigens, Archaeal/metabolism, Bacterial Typing Techniques, Biodiversity, Bioreactors/*microbiology, Euryarchaeota/classification/immunology/isolation & purification/*physiology, Microscopy, Electron, Scanning, Refuse Disposal/methodsPhylogeny
Phylogeny16636448Isolation and characteristics of methanosaeta in paddy field soils.Mizukami S, Takeda K, Akada S, Fujita TBiosci Biotechnol Biochem10.1271/bbb.70.8282006Acetates/pharmacology, Cell Proliferation, Cell Shape, Colony Count, Microbial, Methanosarcinaceae/classification/cytology/*genetics/*isolation & purification, Microscopy, Electron, Scanning, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil, *Soil MicrobiologyPhenotype

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
974Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2139)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2139
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76504Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47549.1StrainInfo: A central database for resolving microbial strain identifiers