Strain identifier
BacDive ID: 7011
Type strain: 
Species: Methanofollis liminatans
Strain Designation: BM1
Strain history: <- G. Zellner; BM1 (Methanoculleus sp.) <- G. Zellner {1990}
NCBI tax ID(s): 2201 (species)
version 8.1 (current version)
General
@ref: 3843
BacDive-ID: 7011
DSM-Number: 10196
keywords: 16S sequence, Archaea, anaerobe, mesophilic
description: Methanofollis liminatans BM1 is an anaerobe, mesophilic archaeon that was isolated from butyrate-degrading, anaerobic fluidized-bed reactor.
NCBI tax id
- NCBI tax id: 2201
- Matching level: species
strain history
- @ref: 3843
- history: <- G. Zellner; BM1 (Methanoculleus sp.) <- G. Zellner {1990}
doi: 10.13145/bacdive7011.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanomicrobia
- order: Methanomicrobiales
- family: Methanomicrobiaceae
- genus: Methanofollis
- species: Methanofollis liminatans
- full scientific name: Methanofollis liminatans (Zellner et al. 1990) Zellner et al. 1999
synonyms
- @ref: 20215
- synonym: Methanogenium liminatans
@ref: 3843
domain: Archaea
phylum: Euryarchaeota
class: Methanomicrobia
order: Methanomicrobiales
family: Methanomicrobiaceae
genus: Methanofollis
species: Methanofollis liminatans
full scientific name: Methanofollis liminatans (Zellner et al. 1990) Zellner et al. 1999
strain designation: BM1
type strain: no
Culture and growth conditions
culture medium
- @ref: 3843
- name: MODIFIED METHANOBACTERIUM MEDIUM (DSMZ Medium 1523)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1523
- composition: Name: MODIFIED METHANOBACTERIUM MEDIUM (DSMZ Medium 1523; with strain-specific modifications) Composition: Brain heart infusion 5.98802 g/l Proteose peptone 5.98802 g/l Na-acetate 3.99202 g/l NaHCO3 3.99202 g/l Yeast extract 1.99601 g/l Na-formate 1.99601 g/l Na2S x 9 H2O 0.499002 g/l KH2PO4 0.499002 g/l L-Cysteine HCl x H2O 0.499002 g/l MgSO4 x 7 H2O 0.399202 g/l NH4Cl 0.399202 g/l NaCl 0.399202 g/l CaCl2 x 2 H2O 0.0499002 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l Pyridoxine hydrochloride 0.000299401 g/l Thiamine-HCl x 2 H2O 0.000199601 g/l Nicotinic acid 0.000199601 g/l CoCl2 x 6 H2O 0.000189621 g/l Calcium pantothenate 9.98004e-05 g/l Vitamin B12 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l p-Aminobenzoic acid 7.98403e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l D-(+)-biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water
culture temp
- @ref: 3843
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 3843
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 3843
- sample type: butyrate-degrading, anaerobic fluidized-bed reactor
- geographic location: Hannover
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Bioreactor |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_187109.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17952;96_68796;97_89438;98_121708;99_187109&stattab=map
- Last taxonomy: Methanofollis
- 16S sequence: Y16429
- Sequence Identity:
- Total samples: 89
- soil counts: 8
- aquatic counts: 71
- animal counts: 1
- plant counts: 9
Safety information
risk assessment
- @ref: 3843
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Methanofollis liminatans 16S rRNA gene, strain DSM 10196
- accession: Y16429
- length: 1430
- database: ena
- NCBI tax ID: 2201
GC content
- @ref: 3843
- GC-content: 60
- method: high performance liquid chromatography (HPLC)
External links
@ref: 3843
culture collection no.: DSM 10196
straininfo link
- @ref: 76472
- straininfo: 48774
literature
- topic: Phylogeny
- Pubmed-ID: 10028269
- title: Reclassification of Methanogenium tationis and Methanogenium liminatans as Methanofollis tationis gen. nov., comb. nov. and Methanofollis liminatans comb. nov. and description of a new strain of Methanofollis liminatans.
- authors: Zellner G, Boone DR, Keswani J, Whitman WB, Woese CR, Hagelstein A, Tindall BJ, Stackebrandt E
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-1-247
- year: 1999
- mesh: Base Sequence, Euryarchaeota/*classification, Lipids/analysis, Methanomicrobiaceae/*classification, Molecular Sequence Data, Phylogeny
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3843 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10196) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10196 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 76472 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48774.1 | StrainInfo: A central database for resolving microbial strain identifiers |