Strain identifier
BacDive ID: 6998
Type strain: 
Species: Methanococcus voltae
Strain history: <- D.R. Ranade, MCM B603 <- P.C. Kadam
NCBI tax ID(s): 2188 (species)
version 8.1 (current version)
General
@ref: 2976
BacDive-ID: 6998
DSM-Number: 7078
keywords: genome sequence, Archaea, anaerobe, mesophilic, Gram-negative
description: Methanococcus voltae DSM 7078 is an anaerobe, mesophilic, Gram-negative archaeon that was isolated from sea sediment.
NCBI tax id
- NCBI tax id: 2188
- Matching level: species
strain history
- @ref: 2976
- history: <- D.R. Ranade, MCM B603 <- P.C. Kadam
doi: 10.13145/bacdive6998.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanococci
- order: Methanococcales
- family: Methanococcaceae
- genus: Methanococcus
- species: Methanococcus voltae
- full scientific name: Methanococcus voltae Balch and Wolfe 1981
@ref: 2976
domain: Archaea
phylum: Euryarchaeota
class: Methanococci
order: Methanococcales
family: Methanococcaceae
genus: Methanococcus
species: Methanococcus voltae
full scientific name: Methanococcus voltae Balch and Wolfe 1981 emend. Ward et al. 1989
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.979
Culture and growth conditions
culture medium
- @ref: 2976
- name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)
- growth: yes
- link: https://mediadive.dsmz.de/medium/141
- composition: Name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141) Composition: NaHCO3 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l FeSO4 x 7 H2O 0.000978474 g/l CaCl2 x 2 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Nicotinic acid 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Folic acid 1.95695e-05 g/l Biotin 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water
culture temp
- @ref: 2976
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 2976 | anaerobe | |
| 69480 | anaerobe | 99.495 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.889 |
Isolation, sampling and environmental information
isolation
- @ref: 2976
- sample type: sea sediment
- geographic location: Maharashtra, Arabian Sea
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 2976
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methanococcus maripaludis DSM 7078 | 2862991205 | draft | img | 39152 |
| 66792 | Methanococcus maripaludis DSM 7078 | GCA_014203295 | scaffold | ncbi | 39152 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 95.382 | no |
| gram-positive | no | 96.556 | no |
| anaerobic | yes | 98.651 | yes |
| aerobic | no | 95.262 | yes |
| halophile | no | 79.972 | no |
| spore-forming | no | 94.816 | no |
| glucose-util | yes | 62.848 | no |
| thermophile | yes | 52.641 | yes |
| motile | no | 86.442 | no |
| glucose-ferment | no | 58.7 | no |
External links
@ref: 2976
culture collection no.: DSM 7078, MCM B603
straininfo link
- @ref: 76459
- straininfo: 48358
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2976 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7078) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7078 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 76459 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48358.1 | StrainInfo: A central database for resolving microbial strain identifiers |